Hb_007818_030

Information

Type -
Description -
Location Contig7818: 39555-50316
Sequence    

Annotation

kegg
ID pop:POPTR_0007s03810g
description hypothetical protein
nr
ID XP_012066572.1
description PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24374 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcriptional corepressor seuss-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57999: 42722-49483 , PASA_asmbl_58001: 50161-50741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007818_030 0.0 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
2 Hb_007426_060 0.0502435002 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
3 Hb_000703_130 0.0600237235 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
4 Hb_001673_050 0.0633502656 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
5 Hb_001221_090 0.0637640636 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
6 Hb_000526_060 0.0676817367 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
7 Hb_000176_100 0.0693113278 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
8 Hb_001534_210 0.0694108843 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
9 Hb_155159_010 0.0696804879 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
10 Hb_002027_280 0.0723026709 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
11 Hb_001904_030 0.0723178493 - - PREDICTED: importin-5 [Jatropha curcas]
12 Hb_014720_020 0.0739610993 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
13 Hb_005832_010 0.0740846287 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
14 Hb_000579_010 0.0741212622 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
15 Hb_002687_090 0.0745945919 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
16 Hb_004032_230 0.0771106194 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
17 Hb_009476_090 0.0771119239 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
18 Hb_003142_040 0.0785128596 - - Sf3a3 [Gossypium arboreum]
19 Hb_009302_030 0.078827441 - - hypothetical protein RCOM_1176340 [Ricinus communis]
20 Hb_000099_040 0.0804974003 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_007818_030 Hb_007818_030 Hb_007426_060 Hb_007426_060 Hb_007818_030--Hb_007426_060 Hb_000703_130 Hb_000703_130 Hb_007818_030--Hb_000703_130 Hb_001673_050 Hb_001673_050 Hb_007818_030--Hb_001673_050 Hb_001221_090 Hb_001221_090 Hb_007818_030--Hb_001221_090 Hb_000526_060 Hb_000526_060 Hb_007818_030--Hb_000526_060 Hb_000176_100 Hb_000176_100 Hb_007818_030--Hb_000176_100 Hb_001534_210 Hb_001534_210 Hb_007426_060--Hb_001534_210 Hb_007426_060--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_007426_060--Hb_005542_140 Hb_000099_040 Hb_000099_040 Hb_007426_060--Hb_000099_040 Hb_007426_060--Hb_000176_100 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000703_130--Hb_000176_100 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_004429_010 Hb_004429_010 Hb_001673_050--Hb_004429_010 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_000896_060 Hb_000896_060 Hb_000526_060--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_000526_060--Hb_000117_070 Hb_120470_010 Hb_120470_010 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000526_060--Hb_000703_130 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_005357_260 Hb_005357_260 Hb_000176_100--Hb_005357_260 Hb_011689_030 Hb_011689_030 Hb_000176_100--Hb_011689_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67766 8.28395 4.15278 2.84581 4.97275 3.55709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66838 1.85652 1.78613 4.48808 4.17281

CAGE analysis