Hb_011202_030

Information

Type -
Description -
Location Contig11202: 39949-49418
Sequence    

Annotation

kegg
ID rcu:RCOM_1110810
description arsenite-resistance protein, putative
nr
ID XP_002521645.1
description arsenite-resistance protein, putative [Ricinus communis]
swissprot
ID Q9ZVD0
description Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2
trembl
ID B9S6M6
description Arsenite-resistance protein, putative OS=Ricinus communis GN=RCOM_1110810 PE=4 SV=1
Gene Ontology
ID GO:0046872
description serrate rna effector molecule

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03638: 39647-49191 , PASA_asmbl_03639: 43834-44355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011202_030 0.0 - - arsenite-resistance protein, putative [Ricinus communis]
2 Hb_001221_090 0.061275009 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
3 Hb_007283_030 0.0654211664 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
4 Hb_001904_030 0.0708331637 - - PREDICTED: importin-5 [Jatropha curcas]
5 Hb_044486_040 0.0745328211 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
6 Hb_155159_010 0.0753670733 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
7 Hb_009476_090 0.0763692082 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
8 Hb_005832_010 0.0766162956 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
9 Hb_014720_020 0.080146168 - - PREDICTED: serine/threonine-protein kinase ATM [Jatropha curcas]
10 Hb_001341_160 0.0819404838 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
11 Hb_000117_070 0.0821371163 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
12 Hb_007818_030 0.0835389565 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
13 Hb_000172_340 0.0845200381 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
14 Hb_001646_010 0.0851412582 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
15 Hb_003895_020 0.0859063082 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
16 Hb_002687_090 0.0878942866 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
17 Hb_000260_760 0.088875178 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
18 Hb_002461_020 0.0895163162 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
19 Hb_004223_160 0.0896773943 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
20 Hb_001492_040 0.0902265674 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011202_030 Hb_011202_030 Hb_001221_090 Hb_001221_090 Hb_011202_030--Hb_001221_090 Hb_007283_030 Hb_007283_030 Hb_011202_030--Hb_007283_030 Hb_001904_030 Hb_001904_030 Hb_011202_030--Hb_001904_030 Hb_044486_040 Hb_044486_040 Hb_011202_030--Hb_044486_040 Hb_155159_010 Hb_155159_010 Hb_011202_030--Hb_155159_010 Hb_009476_090 Hb_009476_090 Hb_011202_030--Hb_009476_090 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_002092_070 Hb_002092_070 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_007818_040 Hb_007818_040 Hb_007283_030--Hb_007818_040 Hb_007283_030--Hb_155159_010 Hb_000086_050 Hb_000086_050 Hb_007283_030--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_007283_030--Hb_007576_230 Hb_000377_050 Hb_000377_050 Hb_007283_030--Hb_000377_050 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001646_010 Hb_001646_010 Hb_044486_040--Hb_001646_010 Hb_000243_130 Hb_000243_130 Hb_044486_040--Hb_000243_130 Hb_044486_040--Hb_001221_090 Hb_044486_040--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_044486_040--Hb_001341_160 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_000703_130 Hb_000703_130 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020 Hb_009476_090--Hb_000377_050 Hb_009476_090--Hb_005832_010 Hb_009476_090--Hb_000703_130 Hb_004223_160 Hb_004223_160 Hb_009476_090--Hb_004223_160 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_001959_270 Hb_001959_270 Hb_009476_090--Hb_001959_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.82438 31.6561 18.9563 12.8439 15.0429 16.325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58006 4.14785 5.19216 18.3433 20.3869

CAGE analysis