Hb_002282_060

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2282: 123871-129138
Sequence    

Annotation

kegg
ID rcu:RCOM_0813280
description DNA binding protein, putative
nr
ID XP_002518757.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9M7Q3
description ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1
trembl
ID B9RYH3
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0813280 PE=4 SV=1
Gene Ontology
ID GO:0003700
description abscisic acid-insensitive 5-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23778: 124124-129218 , PASA_asmbl_23779: 123896-129218 , PASA_asmbl_23780: 127852-128005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002282_060 0.0 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
2 Hb_155159_010 0.0445369093 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
3 Hb_001231_090 0.0622755027 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
4 Hb_002073_280 0.063624024 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
5 Hb_010661_020 0.0675198084 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
6 Hb_002542_130 0.067638109 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
7 Hb_000703_130 0.0739351542 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
8 Hb_004410_070 0.0746376165 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
9 Hb_000896_060 0.0772401227 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_007576_220 0.0780158437 - - PREDICTED: kanadaptin [Jatropha curcas]
11 Hb_005104_010 0.0784844557 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
12 Hb_004032_230 0.0791643481 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
13 Hb_007017_070 0.0796907591 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
14 Hb_011920_020 0.0799122647 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
15 Hb_001534_210 0.0807026931 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
16 Hb_007818_030 0.0814437904 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
17 Hb_007813_030 0.0826151868 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
18 Hb_002902_020 0.0837761351 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
19 Hb_000218_020 0.084094533 - - synaptosomal associated protein, putative [Ricinus communis]
20 Hb_000526_060 0.0841007244 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]

Gene co-expression network

sample Hb_002282_060 Hb_002282_060 Hb_155159_010 Hb_155159_010 Hb_002282_060--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_002282_060--Hb_001231_090 Hb_002073_280 Hb_002073_280 Hb_002282_060--Hb_002073_280 Hb_010661_020 Hb_010661_020 Hb_002282_060--Hb_010661_020 Hb_002542_130 Hb_002542_130 Hb_002282_060--Hb_002542_130 Hb_000703_130 Hb_000703_130 Hb_002282_060--Hb_000703_130 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_155159_010--Hb_000703_130 Hb_155159_010--Hb_001231_090 Hb_155159_010--Hb_010661_020 Hb_001231_090--Hb_002542_130 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_013749_020 Hb_013749_020 Hb_002073_280--Hb_013749_020 Hb_007576_220 Hb_007576_220 Hb_002073_280--Hb_007576_220 Hb_002073_280--Hb_155159_010 Hb_000526_060 Hb_000526_060 Hb_002073_280--Hb_000526_060 Hb_000896_060 Hb_000896_060 Hb_002073_280--Hb_000896_060 Hb_005542_050 Hb_005542_050 Hb_010661_020--Hb_005542_050 Hb_000926_010 Hb_000926_010 Hb_010661_020--Hb_000926_010 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_001277_300 Hb_001277_300 Hb_002542_130--Hb_001277_300 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_004410_070 Hb_004410_070 Hb_002542_130--Hb_004410_070 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.6119 111.503 52.9498 35.1122 51.8587 55.3292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4558 21.1589 19.8697 35.7171 45.3484

CAGE analysis