Hb_001277_300

Information

Type -
Description -
Location Contig1277: 269038-275709
Sequence    

Annotation

kegg
ID rcu:RCOM_0910950
description ATP binding protein, putative (EC:2.7.11.1)
nr
ID XP_012069719.1
description PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067KVN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02239 PE=4 SV=1
Gene Ontology
ID GO:0004672
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08491: 269054-272418 , PASA_asmbl_08492: 272451-275124 , PASA_asmbl_08493: 273790-273971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_300 0.0 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
2 Hb_002027_280 0.0616492402 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
3 Hb_002542_130 0.0651957637 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
4 Hb_000243_210 0.0663574411 - - protein with unknown function [Ricinus communis]
5 Hb_001318_070 0.0692670312 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
6 Hb_001231_090 0.0706442617 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_089140_050 0.0742097043 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
8 Hb_002253_080 0.0760330309 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
9 Hb_000176_100 0.0771178478 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
10 Hb_000260_640 0.0795536778 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
11 Hb_000671_070 0.0803101047 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
12 Hb_029977_040 0.0806934346 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
13 Hb_000949_020 0.0811453162 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
14 Hb_003124_160 0.0815637004 - - dynamin, putative [Ricinus communis]
15 Hb_001322_130 0.0819798891 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
16 Hb_004429_010 0.0820242275 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_000579_010 0.0820364318 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
18 Hb_000230_090 0.0823314936 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
19 Hb_007810_110 0.0836375305 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
20 Hb_004129_070 0.0836932079 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_300 Hb_001277_300 Hb_002027_280 Hb_002027_280 Hb_001277_300--Hb_002027_280 Hb_002542_130 Hb_002542_130 Hb_001277_300--Hb_002542_130 Hb_000243_210 Hb_000243_210 Hb_001277_300--Hb_000243_210 Hb_001318_070 Hb_001318_070 Hb_001277_300--Hb_001318_070 Hb_001231_090 Hb_001231_090 Hb_001277_300--Hb_001231_090 Hb_089140_050 Hb_089140_050 Hb_001277_300--Hb_089140_050 Hb_004429_010 Hb_004429_010 Hb_002027_280--Hb_004429_010 Hb_003124_160 Hb_003124_160 Hb_002027_280--Hb_003124_160 Hb_001904_030 Hb_001904_030 Hb_002027_280--Hb_001904_030 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_000352_070 Hb_000352_070 Hb_002027_280--Hb_000352_070 Hb_002542_130--Hb_001231_090 Hb_001545_150 Hb_001545_150 Hb_002542_130--Hb_001545_150 Hb_005188_040 Hb_005188_040 Hb_002542_130--Hb_005188_040 Hb_004410_070 Hb_004410_070 Hb_002542_130--Hb_004410_070 Hb_002282_060 Hb_002282_060 Hb_002542_130--Hb_002282_060 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_001318_070--Hb_000879_040 Hb_001318_070--Hb_000099_040 Hb_001318_070--Hb_000174_060 Hb_001268_280 Hb_001268_280 Hb_001318_070--Hb_001268_280 Hb_001318_070--Hb_002205_250 Hb_001231_090--Hb_002282_060 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_004453_110 Hb_004453_110 Hb_089140_050--Hb_004453_110 Hb_089140_050--Hb_000671_070 Hb_000429_220 Hb_000429_220 Hb_089140_050--Hb_000429_220 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_011344_020 Hb_011344_020 Hb_089140_050--Hb_011344_020 Hb_000035_410 Hb_000035_410 Hb_089140_050--Hb_000035_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.87053 14.9955 7.91298 8.6253 12.0326 9.58915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.0836 4.84376 5.14541 5.94788 10.1891

CAGE analysis