Hb_001534_210

Information

Type transcription factor
Description TF Family: PHD
Location Contig1534: 142664-154207
Sequence    

Annotation

kegg
ID rcu:RCOM_1352200
description DNA binding protein, putative
nr
ID XP_012082509.1
description PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16603 PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13195: 145124-152779 , PASA_asmbl_13196: 145617-147608 , PASA_asmbl_13198: 153708-153983 , PASA_asmbl_13199: 153984-154504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_210 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
2 Hb_004032_230 0.0500766393 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
3 Hb_007426_060 0.0507499548 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
4 Hb_003849_140 0.0581579398 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
5 Hb_000099_040 0.0589994839 - - unnamed protein product [Coffea canephora]
6 Hb_001231_090 0.0640424848 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_009302_030 0.0664365107 - - hypothetical protein RCOM_1176340 [Ricinus communis]
8 Hb_004976_010 0.0666878535 - - hypothetical protein RCOM_1429110 [Ricinus communis]
9 Hb_000445_060 0.0674912386 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
10 Hb_000500_300 0.0675413856 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
11 Hb_002542_130 0.068614711 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
12 Hb_000189_630 0.0687438858 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_010417_070 0.0690447276 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
14 Hb_007818_030 0.0694108843 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
15 Hb_060094_020 0.0699995488 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
16 Hb_023226_070 0.0722331542 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001723_010 0.0725398822 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
18 Hb_010661_020 0.073473022 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
19 Hb_005542_050 0.0736986572 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
20 Hb_001673_050 0.0737999798 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001534_210 Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001534_210--Hb_004032_230 Hb_007426_060 Hb_007426_060 Hb_001534_210--Hb_007426_060 Hb_003849_140 Hb_003849_140 Hb_001534_210--Hb_003849_140 Hb_000099_040 Hb_000099_040 Hb_001534_210--Hb_000099_040 Hb_001231_090 Hb_001231_090 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_102438_030 Hb_102438_030 Hb_004032_230--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_004032_230--Hb_000102_050 Hb_004032_230--Hb_001231_090 Hb_004032_230--Hb_003849_140 Hb_007818_030 Hb_007818_030 Hb_007426_060--Hb_007818_030 Hb_001673_050 Hb_001673_050 Hb_007426_060--Hb_001673_050 Hb_005542_140 Hb_005542_140 Hb_007426_060--Hb_005542_140 Hb_007426_060--Hb_000099_040 Hb_000176_100 Hb_000176_100 Hb_007426_060--Hb_000176_100 Hb_000915_060 Hb_000915_060 Hb_003849_140--Hb_000915_060 Hb_000723_110 Hb_000723_110 Hb_003849_140--Hb_000723_110 Hb_026980_020 Hb_026980_020 Hb_003849_140--Hb_026980_020 Hb_000500_300 Hb_000500_300 Hb_003849_140--Hb_000500_300 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_000243_210 Hb_000243_210 Hb_000099_040--Hb_000243_210 Hb_000099_040--Hb_001673_050 Hb_001318_070 Hb_001318_070 Hb_000099_040--Hb_001318_070 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_002542_130 Hb_002542_130 Hb_001231_090--Hb_002542_130 Hb_002282_060 Hb_002282_060 Hb_001231_090--Hb_002282_060 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72715 15.6053 11.067 5.59206 8.12792 8.17028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.186 4.532 4.82203 8.26464 8.30922

CAGE analysis