Hb_011249_060

Information

Type -
Description -
Location Contig11249: 53460-55088
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12600g
description POPTRDRAFT_779713; hypothetical protein
nr
ID XP_002325195.1
description hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IMU1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12600g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03854: 53516-76854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011249_060 0.0 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
2 Hb_001427_150 0.0562452825 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
3 Hb_009302_030 0.0614269679 - - hypothetical protein RCOM_1176340 [Ricinus communis]
4 Hb_004899_040 0.0646775772 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
5 Hb_009486_160 0.0694205112 - - PREDICTED: metacaspase-1 [Jatropha curcas]
6 Hb_002903_140 0.0725407104 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
7 Hb_015183_100 0.0733792208 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
8 Hb_005765_040 0.0736202667 - - transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_000866_080 0.0736868141 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
10 Hb_004319_050 0.0737627545 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
11 Hb_002928_190 0.0786328515 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
12 Hb_000649_250 0.0808693705 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
13 Hb_001257_100 0.0814154919 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
14 Hb_000189_630 0.0827529169 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_000373_170 0.083145441 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
16 Hb_004526_010 0.0833674967 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
17 Hb_159295_010 0.0849526401 - - hypothetical protein RCOM_1520720 [Ricinus communis]
18 Hb_002119_090 0.0849768128 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
19 Hb_004517_020 0.0860392019 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
20 Hb_000977_300 0.0861543045 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]

Gene co-expression network

sample Hb_011249_060 Hb_011249_060 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_004899_040 Hb_004899_040 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_001427_150--Hb_004899_040 Hb_001427_150--Hb_009302_030 Hb_001488_040 Hb_001488_040 Hb_001427_150--Hb_001488_040 Hb_002928_190 Hb_002928_190 Hb_001427_150--Hb_002928_190 Hb_005765_040 Hb_005765_040 Hb_001427_150--Hb_005765_040 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_000363_120 Hb_000363_120 Hb_004899_040--Hb_000363_120 Hb_004899_040--Hb_009302_030 Hb_000094_090 Hb_000094_090 Hb_004899_040--Hb_000094_090 Hb_000649_250 Hb_000649_250 Hb_004899_040--Hb_000649_250 Hb_004899_040--Hb_000703_200 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_001862_110 Hb_001862_110 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_009486_160--Hb_000363_120 Hb_009486_160--Hb_004899_040 Hb_030545_030 Hb_030545_030 Hb_002903_140--Hb_030545_030 Hb_008165_030 Hb_008165_030 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_007017_070 Hb_007017_070 Hb_002903_140--Hb_007017_070 Hb_096819_010 Hb_096819_010 Hb_002903_140--Hb_096819_010 Hb_003142_040 Hb_003142_040 Hb_015183_100--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_015183_100--Hb_001171_030 Hb_002968_070 Hb_002968_070 Hb_015183_100--Hb_002968_070 Hb_012940_040 Hb_012940_040 Hb_015183_100--Hb_012940_040 Hb_001341_160 Hb_001341_160 Hb_015183_100--Hb_001341_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.06887 26.3288 14.0284 9.69722 6.86559 7.56328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.45785 4.43703 5.06942 11.1178 10.1416

CAGE analysis