Hb_004319_070

Information

Type -
Description -
Location Contig4319: 55615-57041
Sequence    

Annotation

kegg
ID rcu:RCOM_0852460
description hypothetical protein
nr
ID XP_002517398.1
description hypothetical protein RCOM_0852460 [Ricinus communis]
swissprot
ID Q9S745
description Lipase-like PAD4 OS=Arabidopsis thaliana GN=PAD4 PE=1 SV=1
trembl
ID B9RUF3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0852460 PE=4 SV=1
Gene Ontology
ID GO:0031347
description senescence-associated carboxylesterase 101-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42285: 44512-57020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004319_070 0.0 - - hypothetical protein RCOM_0852460 [Ricinus communis]
2 Hb_009486_160 0.0788887652 - - PREDICTED: metacaspase-1 [Jatropha curcas]
3 Hb_000227_310 0.0829396001 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
4 Hb_004526_010 0.083707986 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
5 Hb_004195_120 0.0855648568 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
6 Hb_000189_630 0.087065654 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_011249_060 0.0889253782 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
8 Hb_004319_050 0.0899904697 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
9 Hb_030545_030 0.0904249407 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
10 Hb_003849_140 0.093229288 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
11 Hb_002903_140 0.0933598431 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
12 Hb_003992_180 0.093699483 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
13 Hb_007017_070 0.0939545097 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
14 Hb_102438_030 0.0939986842 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
15 Hb_012940_040 0.0962437643 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
16 Hb_000723_110 0.0972533835 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
17 Hb_007576_220 0.0975049442 - - PREDICTED: kanadaptin [Jatropha curcas]
18 Hb_000023_350 0.0993795253 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
19 Hb_000526_030 0.1009163192 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
20 Hb_015183_100 0.101344791 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]

Gene co-expression network

sample Hb_004319_070 Hb_004319_070 Hb_009486_160 Hb_009486_160 Hb_004319_070--Hb_009486_160 Hb_000227_310 Hb_000227_310 Hb_004319_070--Hb_000227_310 Hb_004526_010 Hb_004526_010 Hb_004319_070--Hb_004526_010 Hb_004195_120 Hb_004195_120 Hb_004319_070--Hb_004195_120 Hb_000189_630 Hb_000189_630 Hb_004319_070--Hb_000189_630 Hb_011249_060 Hb_011249_060 Hb_004319_070--Hb_011249_060 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_001862_110 Hb_001862_110 Hb_009486_160--Hb_001862_110 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_007017_070 Hb_007017_070 Hb_000227_310--Hb_007017_070 Hb_030545_030 Hb_030545_030 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000264_080 Hb_000264_080 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_000227_310--Hb_004195_120 Hb_004319_050 Hb_004319_050 Hb_004526_010--Hb_004319_050 Hb_000796_120 Hb_000796_120 Hb_004526_010--Hb_000796_120 Hb_004526_010--Hb_030545_030 Hb_003992_180 Hb_003992_180 Hb_004526_010--Hb_003992_180 Hb_004526_010--Hb_009486_160 Hb_159295_010 Hb_159295_010 Hb_004526_010--Hb_159295_010 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_003142_040 Hb_003142_040 Hb_000189_630--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_000189_630--Hb_001171_030 Hb_000977_300 Hb_000977_300 Hb_000189_630--Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000189_630--Hb_004517_020 Hb_005333_140 Hb_005333_140 Hb_000189_630--Hb_005333_140 Hb_005834_040 Hb_005834_040 Hb_000189_630--Hb_005834_040 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_009302_030 Hb_009302_030 Hb_011249_060--Hb_009302_030 Hb_011249_060--Hb_004899_040 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4737 35.4065 24.0816 9.39821 13.6108 8.94101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.10763 5.98324 6.68341 17.7144 9.19186

CAGE analysis