Hb_005649_090

Information

Type -
Description -
Location Contig5649: 50465-53542
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13000g
description POPTRDRAFT_577758; hypothetical protein
nr
ID XP_012084829.1
description PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
swissprot
ID Q9LMX5
description Ninja-family protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1
trembl
ID A0A067JWV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19947 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48975: 51045-53205 , PASA_asmbl_48977: 50854-53631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_090 0.0 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
2 Hb_004195_120 0.080998518 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
3 Hb_000056_300 0.0861240012 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
4 Hb_001009_090 0.0904229423 - - CDK protein [Hevea brasiliensis]
5 Hb_002903_140 0.0919229753 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
6 Hb_003226_110 0.094822668 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
7 Hb_030545_030 0.0952778416 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
8 Hb_003895_020 0.1010086502 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
9 Hb_096819_010 0.1011924688 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
10 Hb_000270_110 0.1022720116 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
11 Hb_000163_230 0.1024038006 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
12 Hb_152910_010 0.1030451488 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
13 Hb_004526_010 0.1036748934 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
14 Hb_003078_030 0.1066133975 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
15 Hb_001484_100 0.1074990015 - - PREDICTED: cyanate hydratase [Jatropha curcas]
16 Hb_005054_310 0.107889718 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
17 Hb_007031_040 0.1079822632 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
18 Hb_006738_050 0.1085876485 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
19 Hb_004319_050 0.1092085116 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
20 Hb_000836_370 0.1101114897 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005649_090 Hb_005649_090 Hb_004195_120 Hb_004195_120 Hb_005649_090--Hb_004195_120 Hb_000056_300 Hb_000056_300 Hb_005649_090--Hb_000056_300 Hb_001009_090 Hb_001009_090 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_003226_110 Hb_003226_110 Hb_005649_090--Hb_003226_110 Hb_030545_030 Hb_030545_030 Hb_005649_090--Hb_030545_030 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_128695_030 Hb_128695_030 Hb_000056_300--Hb_128695_030 Hb_003078_030 Hb_003078_030 Hb_000056_300--Hb_003078_030 Hb_005054_310 Hb_005054_310 Hb_000056_300--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_000056_300--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_000056_300--Hb_005000_300 Hb_001410_130 Hb_001410_130 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000163_230 Hb_000163_230 Hb_001009_090--Hb_000163_230 Hb_000941_080 Hb_000941_080 Hb_001009_090--Hb_000941_080 Hb_000186_200 Hb_000186_200 Hb_001009_090--Hb_000186_200 Hb_002903_140--Hb_030545_030 Hb_008165_030 Hb_008165_030 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_007017_070 Hb_007017_070 Hb_002903_140--Hb_007017_070 Hb_096819_010 Hb_096819_010 Hb_002903_140--Hb_096819_010 Hb_003226_110--Hb_004310_040 Hb_000866_080 Hb_000866_080 Hb_003226_110--Hb_000866_080 Hb_001484_100 Hb_001484_100 Hb_003226_110--Hb_001484_100 Hb_002477_120 Hb_002477_120 Hb_003226_110--Hb_002477_120 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_030545_030--Hb_000227_310 Hb_030545_030--Hb_007017_070 Hb_030545_030--Hb_008165_030 Hb_030545_030--Hb_096819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3615 54.9211 32.3991 23.5067 11.2703 17.9163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6506 5.34001 6.34432 17.5018 10.7756

CAGE analysis