Hb_002477_120

Information

Type -
Description -
Location Contig2477: 76975-82836
Sequence    

Annotation

kegg
ID rcu:RCOM_0653990
description Phosphatidylcholine: Diacylglycerol Acyltransferase (EC:2.3.1.158)
nr
ID XP_012068907.1
description PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
swissprot
ID Q9FNA9
description Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1
trembl
ID A0A067L9I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24718 PE=4 SV=1
Gene Ontology
ID GO:0008374
description phospholipid:diacylglycerol acyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25781: 80951-81225 , PASA_asmbl_25782: 81038-81825 , PASA_asmbl_25783: 82167-82782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_120 0.0 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
2 Hb_008667_060 0.0912411203 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
3 Hb_002154_020 0.0950629479 - - protein with unknown function [Ricinus communis]
4 Hb_000802_190 0.1054981339 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
5 Hb_007007_080 0.1096980532 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004032_310 0.1104554032 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_002471_140 0.114247797 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
8 Hb_000059_130 0.1162164102 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
9 Hb_002249_050 0.1188049911 - - Auxin response factor, putative [Ricinus communis]
10 Hb_006846_020 0.1204342913 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
11 Hb_003226_110 0.1221111659 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
12 Hb_001195_350 0.1228410858 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
13 Hb_003752_120 0.1234775252 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
14 Hb_002387_040 0.1250457102 - - protein transporter, putative [Ricinus communis]
15 Hb_001488_040 0.1256250951 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
16 Hb_000448_060 0.1275789694 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
17 Hb_002897_050 0.1281553726 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
18 Hb_002400_160 0.1297451268 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
19 Hb_001053_200 0.132087052 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_000107_440 0.1330404443 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002477_120 Hb_002477_120 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_000802_190 Hb_000802_190 Hb_002477_120--Hb_000802_190 Hb_007007_080 Hb_007007_080 Hb_002477_120--Hb_007007_080 Hb_004032_310 Hb_004032_310 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140 Hb_000059_130 Hb_000059_130 Hb_008667_060--Hb_000059_130 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_008667_060--Hb_002471_140 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_000062_080 Hb_000062_080 Hb_000802_190--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_000802_190--Hb_127599_010 Hb_000866_090 Hb_000866_090 Hb_000802_190--Hb_000866_090 Hb_004195_120 Hb_004195_120 Hb_000802_190--Hb_004195_120 Hb_003125_020 Hb_003125_020 Hb_000802_190--Hb_003125_020 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_007007_080--Hb_002154_020 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_002471_140--Hb_000345_340 Hb_002471_140--Hb_000059_130 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.14741 13.3134 4.71727 3.23043 1.03369 1.29639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22238 1.58119 1.08122 4.70757 2.41135

CAGE analysis