Hb_003125_020

Information

Type -
Description -
Location Contig3125: 13360-17485
Sequence    

Annotation

kegg
ID rcu:RCOM_1506390
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_002511194.1
description AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
swissprot
ID Q8LBB2
description SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2
trembl
ID B9RAG9
description AMP-activated protein kinase, gamma regulatory subunit, putative OS=Ricinus communis GN=RCOM_1506390 PE=4 SV=1
Gene Ontology
ID GO:0009505
description snf1-related protein kinase regulatory subunit gamma-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_020 0.0 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
2 Hb_000802_190 0.1189669416 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
3 Hb_000062_080 0.1497159677 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
4 Hb_011930_070 0.1559983202 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
5 Hb_052764_030 0.1581552351 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
6 Hb_000866_090 0.1620724648 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
7 Hb_127599_010 0.1625722187 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
8 Hb_001288_070 0.1639442809 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
9 Hb_002631_040 0.1670207543 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
10 Hb_003060_090 0.1679471718 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
11 Hb_002301_170 0.168909828 - - MAC/Perforin domain-containing protein [Theobroma cacao]
12 Hb_001080_140 0.1738964955 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
13 Hb_000905_170 0.1755702752 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
14 Hb_000976_290 0.1778094691 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
15 Hb_020805_170 0.1791365797 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
16 Hb_004108_170 0.1797212671 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000622_280 0.1800126125 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
18 Hb_000169_170 0.1865904242 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
19 Hb_007125_040 0.1879679119 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
20 Hb_000735_160 0.1885156305 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]

Gene co-expression network

sample Hb_003125_020 Hb_003125_020 Hb_000802_190 Hb_000802_190 Hb_003125_020--Hb_000802_190 Hb_000062_080 Hb_000062_080 Hb_003125_020--Hb_000062_080 Hb_011930_070 Hb_011930_070 Hb_003125_020--Hb_011930_070 Hb_052764_030 Hb_052764_030 Hb_003125_020--Hb_052764_030 Hb_000866_090 Hb_000866_090 Hb_003125_020--Hb_000866_090 Hb_127599_010 Hb_127599_010 Hb_003125_020--Hb_127599_010 Hb_000802_190--Hb_000062_080 Hb_002477_120 Hb_002477_120 Hb_000802_190--Hb_002477_120 Hb_000802_190--Hb_127599_010 Hb_000802_190--Hb_000866_090 Hb_004195_120 Hb_004195_120 Hb_000802_190--Hb_004195_120 Hb_001865_060 Hb_001865_060 Hb_000062_080--Hb_001865_060 Hb_000062_080--Hb_127599_010 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_002005_090 Hb_002005_090 Hb_011930_070--Hb_002005_090 Hb_012799_120 Hb_012799_120 Hb_011930_070--Hb_012799_120 Hb_001019_180 Hb_001019_180 Hb_011930_070--Hb_001019_180 Hb_000905_170 Hb_000905_170 Hb_011930_070--Hb_000905_170 Hb_002110_030 Hb_002110_030 Hb_011930_070--Hb_002110_030 Hb_000227_060 Hb_000227_060 Hb_011930_070--Hb_000227_060 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_009486_160 Hb_009486_160 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_002301_170 Hb_002301_170 Hb_052764_030--Hb_002301_170 Hb_001104_170 Hb_001104_170 Hb_052764_030--Hb_001104_170 Hb_000291_010 Hb_000291_010 Hb_052764_030--Hb_000291_010 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.476761 4.56345 1.57807 0.530176 0.591908 1.51778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07437 0.686727 0.841502 2.64863 0.440849

CAGE analysis