Hb_008667_060

Information

Type -
Description -
Location Contig8667: 46898-57089
Sequence    

Annotation

kegg
ID rcu:RCOM_0423930
description Magnesium and cobalt efflux protein corC, putative
nr
ID XP_002533036.1
description Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
swissprot
ID Q84R21
description DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH2 PE=2 SV=2
trembl
ID B9T467
description Magnesium and cobalt efflux protein corC, putative OS=Ricinus communis GN=RCOM_0423930 PE=4 SV=1
Gene Ontology
ID GO:0016614
description duf21 domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61035: 46747-47102 , PASA_asmbl_61036: 50662-50855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008667_060 0.0 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
2 Hb_000059_130 0.0882107462 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
3 Hb_002477_120 0.0912411203 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
4 Hb_000676_040 0.0994074505 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
5 Hb_002471_140 0.1026300317 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
6 Hb_002524_020 0.1079297915 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
7 Hb_000345_340 0.1085423236 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
8 Hb_000866_090 0.1099136578 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
9 Hb_000216_020 0.1177389057 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
10 Hb_003544_070 0.1233688041 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001699_150 0.1234840241 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
12 Hb_000371_060 0.1274619955 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
13 Hb_003894_100 0.1284915604 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
14 Hb_002154_020 0.1289190146 - - protein with unknown function [Ricinus communis]
15 Hb_001488_040 0.1295133893 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
16 Hb_001675_010 0.1305347453 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
17 Hb_019863_060 0.1313301259 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
18 Hb_000802_190 0.1329688349 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
19 Hb_000613_220 0.1332515062 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_002447_150 0.1343627703 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008667_060 Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_008667_060--Hb_000059_130 Hb_002477_120 Hb_002477_120 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_002471_140 Hb_002471_140 Hb_008667_060--Hb_002471_140 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_000802_190 Hb_000802_190 Hb_002477_120--Hb_000802_190 Hb_007007_080 Hb_007007_080 Hb_002477_120--Hb_007007_080 Hb_004032_310 Hb_004032_310 Hb_002477_120--Hb_004032_310 Hb_002477_120--Hb_002471_140 Hb_000676_040--Hb_002524_020 Hb_000270_230 Hb_000270_230 Hb_000676_040--Hb_000270_230 Hb_000676_040--Hb_000371_060 Hb_001257_100 Hb_001257_100 Hb_000676_040--Hb_001257_100 Hb_000676_040--Hb_000059_130 Hb_002471_140--Hb_000345_340 Hb_002471_140--Hb_000059_130 Hb_000866_090 Hb_000866_090 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002524_020--Hb_000371_060 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_001414_040 Hb_001414_040 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_007765_030 Hb_007765_030 Hb_002524_020--Hb_007765_030 Hb_000271_120 Hb_000271_120 Hb_000345_340--Hb_000271_120 Hb_001080_140 Hb_001080_140 Hb_000345_340--Hb_001080_140 Hb_000345_340--Hb_000866_090 Hb_000345_340--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.515626 3.76873 1.23338 1.2509 0.323035 0.470864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.508242 0.509018 0.185289 2.03882 0.955734

CAGE analysis