Hb_000345_340

Information

Type -
Description -
Location Contig345: 288129-314272
Sequence    

Annotation

kegg
ID egr:104435120
description DNA polymerase zeta catalytic subunit
nr
ID XP_012089052.1
description PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
swissprot
ID Q766Z3
description DNA polymerase zeta catalytic subunit OS=Arabidopsis thaliana GN=REV3 PE=2 SV=1
trembl
ID A0A067JI03
description DNA polymerase OS=Jatropha curcas GN=JCGZ_23340 PE=3 SV=1
Gene Ontology
ID GO:0016035
description dna polymerase zeta catalytic subunit isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36014: 289528-290641 , PASA_asmbl_36015: 290784-292520 , PASA_asmbl_36016: 292632-292883 , PASA_asmbl_36018: 294959-296744 , PASA_asmbl_36019: 296791-298920 , PASA_asmbl_36021: 304281-304720 , PASA_asmbl_36022: 308417-313986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_340 0.0 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
2 Hb_002471_140 0.0878711011 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
3 Hb_008667_060 0.1085423236 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
4 Hb_000271_120 0.1114573251 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
5 Hb_001080_140 0.1165437399 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
6 Hb_000866_090 0.1194749136 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
7 Hb_000059_130 0.1244361224 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
8 Hb_000072_020 0.1274916042 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
9 Hb_001195_020 0.1314178414 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
10 Hb_002524_020 0.1345078638 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
11 Hb_000220_120 0.136460713 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
12 Hb_083078_010 0.1385547744 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
13 Hb_000205_250 0.1399170637 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
14 Hb_004800_130 0.1401631683 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
15 Hb_000645_240 0.1415311619 - - AMP dependent ligase, putative [Ricinus communis]
16 Hb_005504_030 0.1421821386 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
17 Hb_006794_020 0.1427936821 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
18 Hb_019863_060 0.1431775943 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
19 Hb_000527_070 0.1434432657 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
20 Hb_005880_010 0.1435528058 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_340 Hb_000345_340 Hb_002471_140 Hb_002471_140 Hb_000345_340--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000345_340--Hb_008667_060 Hb_000271_120 Hb_000271_120 Hb_000345_340--Hb_000271_120 Hb_001080_140 Hb_001080_140 Hb_000345_340--Hb_001080_140 Hb_000866_090 Hb_000866_090 Hb_000345_340--Hb_000866_090 Hb_000059_130 Hb_000059_130 Hb_000345_340--Hb_000059_130 Hb_002471_140--Hb_008667_060 Hb_002471_140--Hb_000059_130 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_008667_060--Hb_000059_130 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_011925_020 Hb_011925_020 Hb_000271_120--Hb_011925_020 Hb_000205_250 Hb_000205_250 Hb_000271_120--Hb_000205_250 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000049_250 Hb_000049_250 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010 Hb_002631_040 Hb_002631_040 Hb_001080_140--Hb_002631_040 Hb_001396_010 Hb_001396_010 Hb_001080_140--Hb_001396_010 Hb_001080_140--Hb_000866_090 Hb_000622_280 Hb_000622_280 Hb_001080_140--Hb_000622_280 Hb_007765_030 Hb_007765_030 Hb_001080_140--Hb_007765_030 Hb_001080_140--Hb_002524_020 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18086 24.5648 10.6977 7.95406 2.22644 3.75227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19388 2.69162 2.38792 21.3156 10.5297

CAGE analysis