Hb_001080_140

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig1080: 93744-106262
Sequence    

Annotation

kegg
ID rcu:RCOM_1601140
description hypothetical protein
nr
ID XP_002510678.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LE38
description Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1
trembl
ID B9R8N5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1601140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02418: 99892-100291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_140 0.0 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
2 Hb_002631_040 0.0745928716 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
3 Hb_001396_010 0.0961742587 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
4 Hb_000866_090 0.1001714007 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
5 Hb_000622_280 0.1073387285 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
6 Hb_007765_030 0.1100964616 - - PREDICTED: neutral ceramidase [Jatropha curcas]
7 Hb_002524_020 0.1151405904 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
8 Hb_000345_340 0.1165437399 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
9 Hb_000345_320 0.1206325646 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
10 Hb_001427_150 0.1221680029 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
11 Hb_002471_140 0.122614983 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
12 Hb_000009_120 0.1247488015 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
13 Hb_001414_040 0.1262257346 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
14 Hb_001488_040 0.1270656878 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
15 Hb_000220_120 0.1281379529 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
16 Hb_000802_190 0.1285128837 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
17 Hb_002276_040 0.1285338691 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
18 Hb_000271_120 0.129801576 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
19 Hb_000049_250 0.1336043125 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
20 Hb_000205_250 0.1341942024 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_140 Hb_001080_140 Hb_002631_040 Hb_002631_040 Hb_001080_140--Hb_002631_040 Hb_001396_010 Hb_001396_010 Hb_001080_140--Hb_001396_010 Hb_000866_090 Hb_000866_090 Hb_001080_140--Hb_000866_090 Hb_000622_280 Hb_000622_280 Hb_001080_140--Hb_000622_280 Hb_007765_030 Hb_007765_030 Hb_001080_140--Hb_007765_030 Hb_002524_020 Hb_002524_020 Hb_001080_140--Hb_002524_020 Hb_002631_040--Hb_000866_090 Hb_002301_170 Hb_002301_170 Hb_002631_040--Hb_002301_170 Hb_002631_040--Hb_001396_010 Hb_002631_040--Hb_007765_030 Hb_001104_110 Hb_001104_110 Hb_002631_040--Hb_001104_110 Hb_001396_010--Hb_000622_280 Hb_000866_140 Hb_000866_140 Hb_001396_010--Hb_000866_140 Hb_003711_010 Hb_003711_010 Hb_001396_010--Hb_003711_010 Hb_001396_010--Hb_007765_030 Hb_000174_140 Hb_000174_140 Hb_001396_010--Hb_000174_140 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_004800_130 Hb_004800_130 Hb_000622_280--Hb_004800_130 Hb_012940_040 Hb_012940_040 Hb_000622_280--Hb_012940_040 Hb_000622_280--Hb_007765_030 Hb_148682_010 Hb_148682_010 Hb_000622_280--Hb_148682_010 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_000371_060 Hb_000371_060 Hb_002524_020--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_002524_020--Hb_000676_040 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_002524_020--Hb_007765_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199122 1.06761 0.590976 0.313255 0.165085 0.201566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.288171 0.166309 0.218072 0.948697 0.405585

CAGE analysis