Hb_001396_010

Information

Type transcription factor
Description TF Family: TCP
Location Contig1396: 6773-7624
Sequence    

Annotation

kegg
ID rcu:RCOM_1078980
description transcription factor, putative
nr
ID XP_002514876.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9LSD5
description Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1
trembl
ID B9RMA7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1078980 PE=4 SV=1
Gene Ontology
ID GO:0043565
description transcription factor tcp20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_010 0.0 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
2 Hb_000622_280 0.0826682458 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
3 Hb_001080_140 0.0961742587 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
4 Hb_000866_140 0.0975119678 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
5 Hb_003711_010 0.1008963086 - - isopropylmalate synthase, putative [Ricinus communis]
6 Hb_007765_030 0.1043386114 - - PREDICTED: neutral ceramidase [Jatropha curcas]
7 Hb_000174_140 0.104697705 - - JHL23J11.8 [Jatropha curcas]
8 Hb_002276_040 0.1065916772 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
9 Hb_000345_320 0.1072265953 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
10 Hb_003636_080 0.1084055048 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
11 Hb_012940_040 0.1107369159 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
12 Hb_158445_020 0.1118885041 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002301_170 0.1154156828 - - MAC/Perforin domain-containing protein [Theobroma cacao]
14 Hb_002631_040 0.1166772175 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
15 Hb_000890_160 0.1167760034 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
16 Hb_000029_170 0.1171155671 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
17 Hb_000684_510 0.1194360112 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
18 Hb_016734_020 0.1194976153 - - sugar transporter, putative [Ricinus communis]
19 Hb_008725_050 0.1196083347 - - syntaxin, putative [Ricinus communis]
20 Hb_010872_050 0.1207578194 - - hypothetical protein B456_007G078100 [Gossypium raimondii]

Gene co-expression network

sample Hb_001396_010 Hb_001396_010 Hb_000622_280 Hb_000622_280 Hb_001396_010--Hb_000622_280 Hb_001080_140 Hb_001080_140 Hb_001396_010--Hb_001080_140 Hb_000866_140 Hb_000866_140 Hb_001396_010--Hb_000866_140 Hb_003711_010 Hb_003711_010 Hb_001396_010--Hb_003711_010 Hb_007765_030 Hb_007765_030 Hb_001396_010--Hb_007765_030 Hb_000174_140 Hb_000174_140 Hb_001396_010--Hb_000174_140 Hb_004800_130 Hb_004800_130 Hb_000622_280--Hb_004800_130 Hb_000622_280--Hb_001080_140 Hb_012940_040 Hb_012940_040 Hb_000622_280--Hb_012940_040 Hb_000622_280--Hb_007765_030 Hb_148682_010 Hb_148682_010 Hb_000622_280--Hb_148682_010 Hb_002631_040 Hb_002631_040 Hb_001080_140--Hb_002631_040 Hb_000866_090 Hb_000866_090 Hb_001080_140--Hb_000866_090 Hb_001080_140--Hb_007765_030 Hb_002524_020 Hb_002524_020 Hb_001080_140--Hb_002524_020 Hb_003428_090 Hb_003428_090 Hb_000866_140--Hb_003428_090 Hb_003018_030 Hb_003018_030 Hb_000866_140--Hb_003018_030 Hb_000890_160 Hb_000890_160 Hb_000866_140--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_000866_140--Hb_000156_090 Hb_008725_050 Hb_008725_050 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_001723_010 Hb_001723_010 Hb_003711_010--Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_003711_010--Hb_000340_030 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_000373_170 Hb_000373_170 Hb_003711_010--Hb_000373_170 Hb_000139_320 Hb_000139_320 Hb_003711_010--Hb_000139_320 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_000008_090 Hb_000008_090 Hb_000174_140--Hb_000008_090 Hb_000251_040 Hb_000251_040 Hb_000174_140--Hb_000251_040 Hb_001004_140 Hb_001004_140 Hb_000174_140--Hb_001004_140 Hb_000174_140--Hb_000260_660 Hb_000174_140--Hb_002217_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08815 13.905 13.1439 6.44195 3.72583 4.32652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66555 3.61527 4.53196 14.4451 5.32766

CAGE analysis