Hb_000008_090

Information

Type -
Description -
Location Contig8: 75414-84099
Sequence    

Annotation

kegg
ID tcc:TCM_042083
description 3'-5'-exoribonuclease family protein isoform 1
nr
ID XP_012064793.1
description PREDICTED: exosome complex component MTR3 [Jatropha curcas]
swissprot
ID Q6P0I8
description Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
trembl
ID A0A067L6C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05498 PE=4 SV=1
Gene Ontology
ID GO:0005634
description exosome complex component mtr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58656: 75595-82579 , PASA_asmbl_58657: 75499-81517
cDNA
(Sanger)
(ID:Location)		 019_I21.ab1: 75499-81517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_090 0.0 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
2 Hb_001004_140 0.0828123942 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
3 Hb_000251_040 0.0859082347 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
4 Hb_000174_140 0.0880518832 - - JHL23J11.8 [Jatropha curcas]
5 Hb_000260_660 0.1082596739 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007257_060 0.1150220783 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
7 Hb_005180_010 0.118921135 - - cyclophilin [Hevea brasiliensis]
8 Hb_007185_040 0.1199246377 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
9 Hb_001396_010 0.1231364522 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
10 Hb_000979_220 0.1239954502 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
11 Hb_089140_040 0.1246386149 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
12 Hb_000144_120 0.1267532404 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000866_140 0.1269664669 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
14 Hb_007765_030 0.1275981822 - - PREDICTED: neutral ceramidase [Jatropha curcas]
15 Hb_002272_170 0.1290237621 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
16 Hb_000023_350 0.1295651158 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
17 Hb_002276_040 0.1319179049 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
18 Hb_002217_220 0.1324501459 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
19 Hb_000345_320 0.1328419517 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
20 Hb_001300_280 0.133485482 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]

Gene co-expression network

sample Hb_000008_090 Hb_000008_090 Hb_001004_140 Hb_001004_140 Hb_000008_090--Hb_001004_140 Hb_000251_040 Hb_000251_040 Hb_000008_090--Hb_000251_040 Hb_000174_140 Hb_000174_140 Hb_000008_090--Hb_000174_140 Hb_000260_660 Hb_000260_660 Hb_000008_090--Hb_000260_660 Hb_007257_060 Hb_007257_060 Hb_000008_090--Hb_007257_060 Hb_005180_010 Hb_005180_010 Hb_000008_090--Hb_005180_010 Hb_000144_120 Hb_000144_120 Hb_001004_140--Hb_000144_120 Hb_007185_040 Hb_007185_040 Hb_001004_140--Hb_007185_040 Hb_089140_040 Hb_089140_040 Hb_001004_140--Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_001004_140--Hb_006468_010 Hb_001004_140--Hb_000174_140 Hb_002272_170 Hb_002272_170 Hb_000251_040--Hb_002272_170 Hb_000251_040--Hb_000174_140 Hb_083799_010 Hb_083799_010 Hb_000251_040--Hb_083799_010 Hb_000251_040--Hb_005180_010 Hb_000251_040--Hb_001004_140 Hb_000174_140--Hb_000260_660 Hb_001396_010 Hb_001396_010 Hb_000174_140--Hb_001396_010 Hb_002217_220 Hb_002217_220 Hb_000174_140--Hb_002217_220 Hb_000260_660--Hb_002217_220 Hb_007765_030 Hb_007765_030 Hb_000260_660--Hb_007765_030 Hb_000260_660--Hb_083799_010 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040 Hb_012092_050 Hb_012092_050 Hb_007257_060--Hb_012092_050 Hb_001300_280 Hb_001300_280 Hb_007257_060--Hb_001300_280 Hb_001357_310 Hb_001357_310 Hb_007257_060--Hb_001357_310 Hb_000008_420 Hb_000008_420 Hb_007257_060--Hb_000008_420 Hb_006588_060 Hb_006588_060 Hb_007257_060--Hb_006588_060 Hb_000402_150 Hb_000402_150 Hb_007257_060--Hb_000402_150 Hb_033772_070 Hb_033772_070 Hb_005180_010--Hb_033772_070 Hb_008053_060 Hb_008053_060 Hb_005180_010--Hb_008053_060 Hb_005180_010--Hb_002272_170 Hb_005180_010--Hb_007185_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49919 5.25012 4.40002 4.01941 2.7726 1.12456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32406 2.19448 1.82692 7.19397 1.51942

CAGE analysis