Hb_000251_040

Information

Type -
Description -
Location Contig251: 56917-70120
Sequence    

Annotation

kegg
ID rcu:RCOM_1409950
description DNA polymerase alpha catalytic subunit, putative (EC:2.7.7.7)
nr
ID XP_012079247.1
description PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
swissprot
ID Q9FHA3
description DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana GN=POLA PE=3 SV=2
trembl
ID A0A067KJD6
description DNA polymerase OS=Jatropha curcas GN=JCGZ_12410 PE=3 SV=1
Gene Ontology
ID GO:0000166
description dna polymerase alpha catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26220: 57089-58497 , PASA_asmbl_26221: 58513-59574 , PASA_asmbl_26222: 61754-62908 , PASA_asmbl_26223: 63044-64005 , PASA_asmbl_26224: 64052-65774 , PASA_asmbl_26225: 65826-66925 , PASA_asmbl_26226: 67170-69153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_040 0.0 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
2 Hb_002272_170 0.0758835919 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
3 Hb_000008_090 0.0859082347 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
4 Hb_000174_140 0.0961923132 - - JHL23J11.8 [Jatropha curcas]
5 Hb_083799_010 0.0973058526 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_005180_010 0.1012475425 - - cyclophilin [Hevea brasiliensis]
7 Hb_001004_140 0.1064864495 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
8 Hb_003849_240 0.1067577116 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_002596_060 0.1072479332 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000260_660 0.1084239577 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000395_220 0.1121252381 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_000009_120 0.1132917331 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
13 Hb_007765_030 0.1157622798 - - PREDICTED: neutral ceramidase [Jatropha curcas]
14 Hb_007426_140 0.1213058682 - - ornithine aminotransferase, putative [Ricinus communis]
15 Hb_000243_300 0.1226158784 - - catalytic, putative [Ricinus communis]
16 Hb_002259_080 0.1232415078 - - protein transport protein sec23, putative [Ricinus communis]
17 Hb_006829_100 0.1235880972 - - conserved hypothetical protein [Ricinus communis]
18 Hb_033772_070 0.1250031852 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
19 Hb_007747_170 0.1258159807 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
20 Hb_019840_030 0.1263352351 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000251_040 Hb_000251_040 Hb_002272_170 Hb_002272_170 Hb_000251_040--Hb_002272_170 Hb_000008_090 Hb_000008_090 Hb_000251_040--Hb_000008_090 Hb_000174_140 Hb_000174_140 Hb_000251_040--Hb_000174_140 Hb_083799_010 Hb_083799_010 Hb_000251_040--Hb_083799_010 Hb_005180_010 Hb_005180_010 Hb_000251_040--Hb_005180_010 Hb_001004_140 Hb_001004_140 Hb_000251_040--Hb_001004_140 Hb_002272_170--Hb_083799_010 Hb_000395_220 Hb_000395_220 Hb_002272_170--Hb_000395_220 Hb_000692_160 Hb_000692_160 Hb_002272_170--Hb_000692_160 Hb_033772_070 Hb_033772_070 Hb_002272_170--Hb_033772_070 Hb_007426_140 Hb_007426_140 Hb_002272_170--Hb_007426_140 Hb_000008_090--Hb_001004_140 Hb_000008_090--Hb_000174_140 Hb_000260_660 Hb_000260_660 Hb_000008_090--Hb_000260_660 Hb_007257_060 Hb_007257_060 Hb_000008_090--Hb_007257_060 Hb_000008_090--Hb_005180_010 Hb_000174_140--Hb_001004_140 Hb_000174_140--Hb_000260_660 Hb_001396_010 Hb_001396_010 Hb_000174_140--Hb_001396_010 Hb_002217_220 Hb_002217_220 Hb_000174_140--Hb_002217_220 Hb_083799_010--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_083799_010--Hb_007426_140 Hb_083799_010--Hb_000260_660 Hb_005180_010--Hb_033772_070 Hb_008053_060 Hb_008053_060 Hb_005180_010--Hb_008053_060 Hb_005180_010--Hb_002272_170 Hb_007185_040 Hb_007185_040 Hb_005180_010--Hb_007185_040 Hb_000144_120 Hb_000144_120 Hb_001004_140--Hb_000144_120 Hb_001004_140--Hb_007185_040 Hb_089140_040 Hb_089140_040 Hb_001004_140--Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_001004_140--Hb_006468_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.655786 2.13565 1.58138 1.9276 1.30137 0.769365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09671 0.451781 0.727026 3.00733 0.709965

CAGE analysis