Hb_000174_140

Information

Type -
Description -
Location Contig174: 169188-175826
Sequence    

Annotation

kegg
ID rcu:RCOM_1076830
description chromatin assembly factor 1, subunit A, putative
nr
ID BAJ53153.1
description JHL23J11.8 [Jatropha curcas]
swissprot
ID Q9SXY0
description Chromatin assembly factor 1 subunit FAS1 OS=Arabidopsis thaliana GN=FAS1 PE=1 SV=1
trembl
ID E6NU43
description JHL23J11.8 protein OS=Jatropha curcas GN=JHL23J11.8 PE=4 SV=1
Gene Ontology
ID GO:0006261
description chromatin assembly factor 1 subunit fas1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16560: 169437-171551 , PASA_asmbl_16561: 171958-173667 , PASA_asmbl_16563: 174350-175876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_140 0.0 - - JHL23J11.8 [Jatropha curcas]
2 Hb_000008_090 0.0880518832 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
3 Hb_000251_040 0.0961923132 - - PREDICTED: DNA polymerase alpha catalytic subunit isoform X1 [Jatropha curcas]
4 Hb_001004_140 0.0984335574 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
5 Hb_000260_660 0.1044309868 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001396_010 0.104697705 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
7 Hb_002217_220 0.1102406656 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
8 Hb_002276_040 0.1115770988 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
9 Hb_007765_030 0.112396578 - - PREDICTED: neutral ceramidase [Jatropha curcas]
10 Hb_002272_170 0.1131366242 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
11 Hb_000144_120 0.1142333057 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000345_320 0.119703797 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
13 Hb_002687_060 0.1236530901 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_000009_140 0.1255024723 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
15 Hb_000866_140 0.1277977776 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
16 Hb_000395_220 0.1289732156 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_006006_040 0.1292536829 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
18 Hb_000009_120 0.1299543255 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
19 Hb_000890_160 0.1318540373 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
20 Hb_000258_090 0.1321474371 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_140 Hb_000174_140 Hb_000008_090 Hb_000008_090 Hb_000174_140--Hb_000008_090 Hb_000251_040 Hb_000251_040 Hb_000174_140--Hb_000251_040 Hb_001004_140 Hb_001004_140 Hb_000174_140--Hb_001004_140 Hb_000260_660 Hb_000260_660 Hb_000174_140--Hb_000260_660 Hb_001396_010 Hb_001396_010 Hb_000174_140--Hb_001396_010 Hb_002217_220 Hb_002217_220 Hb_000174_140--Hb_002217_220 Hb_000008_090--Hb_001004_140 Hb_000008_090--Hb_000251_040 Hb_000008_090--Hb_000260_660 Hb_007257_060 Hb_007257_060 Hb_000008_090--Hb_007257_060 Hb_005180_010 Hb_005180_010 Hb_000008_090--Hb_005180_010 Hb_002272_170 Hb_002272_170 Hb_000251_040--Hb_002272_170 Hb_083799_010 Hb_083799_010 Hb_000251_040--Hb_083799_010 Hb_000251_040--Hb_005180_010 Hb_000251_040--Hb_001004_140 Hb_000144_120 Hb_000144_120 Hb_001004_140--Hb_000144_120 Hb_007185_040 Hb_007185_040 Hb_001004_140--Hb_007185_040 Hb_089140_040 Hb_089140_040 Hb_001004_140--Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_001004_140--Hb_006468_010 Hb_000260_660--Hb_002217_220 Hb_007765_030 Hb_007765_030 Hb_000260_660--Hb_007765_030 Hb_000260_660--Hb_083799_010 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040 Hb_000622_280 Hb_000622_280 Hb_001396_010--Hb_000622_280 Hb_001080_140 Hb_001080_140 Hb_001396_010--Hb_001080_140 Hb_000866_140 Hb_000866_140 Hb_001396_010--Hb_000866_140 Hb_003711_010 Hb_003711_010 Hb_001396_010--Hb_003711_010 Hb_001396_010--Hb_007765_030 Hb_002217_220--Hb_007765_030 Hb_011287_010 Hb_011287_010 Hb_002217_220--Hb_011287_010 Hb_000395_220 Hb_000395_220 Hb_002217_220--Hb_000395_220 Hb_002217_220--Hb_083799_010 Hb_007426_140 Hb_007426_140 Hb_002217_220--Hb_007426_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42586 5.38354 4.0095 4.17665 1.5902 1.30527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53775 1.21009 2.10925 6.86197 1.36593

CAGE analysis