Hb_000622_280

Information

Type -
Description -
Location Contig622: 232367-235985
Sequence    

Annotation

kegg
ID rcu:RCOM_1617270
description hypothetical protein
nr
ID XP_012083276.1
description PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
swissprot
ID Q66GQ2
description Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=2 SV=2
trembl
ID A0A067JX41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14307 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51581: 232470-235793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_280 0.0 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
2 Hb_001396_010 0.0826682458 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
3 Hb_004800_130 0.103222895 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
4 Hb_001080_140 0.1073387285 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
5 Hb_012940_040 0.1158914271 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
6 Hb_007765_030 0.1192031227 - - PREDICTED: neutral ceramidase [Jatropha curcas]
7 Hb_148682_010 0.1216769272 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
8 Hb_000802_190 0.1256487384 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
9 Hb_001195_020 0.1303812181 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
10 Hb_002524_020 0.1309479809 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
11 Hb_001205_180 0.1321100769 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
12 Hb_002471_140 0.1323765723 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
13 Hb_015183_100 0.1330209102 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
14 Hb_000866_090 0.1336998129 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
15 Hb_001699_150 0.1343311831 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
16 Hb_002687_060 0.1379537895 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
17 Hb_000174_140 0.1388219396 - - JHL23J11.8 [Jatropha curcas]
18 Hb_005504_030 0.1393462182 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
19 Hb_004319_070 0.1399496436 - - hypothetical protein RCOM_0852460 [Ricinus communis]
20 Hb_001341_160 0.1407624458 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000622_280 Hb_000622_280 Hb_001396_010 Hb_001396_010 Hb_000622_280--Hb_001396_010 Hb_004800_130 Hb_004800_130 Hb_000622_280--Hb_004800_130 Hb_001080_140 Hb_001080_140 Hb_000622_280--Hb_001080_140 Hb_012940_040 Hb_012940_040 Hb_000622_280--Hb_012940_040 Hb_007765_030 Hb_007765_030 Hb_000622_280--Hb_007765_030 Hb_148682_010 Hb_148682_010 Hb_000622_280--Hb_148682_010 Hb_001396_010--Hb_001080_140 Hb_000866_140 Hb_000866_140 Hb_001396_010--Hb_000866_140 Hb_003711_010 Hb_003711_010 Hb_001396_010--Hb_003711_010 Hb_001396_010--Hb_007765_030 Hb_000174_140 Hb_000174_140 Hb_001396_010--Hb_000174_140 Hb_001205_180 Hb_001205_180 Hb_004800_130--Hb_001205_180 Hb_001133_090 Hb_001133_090 Hb_004800_130--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_004800_130--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_004800_130--Hb_010775_010 Hb_006794_020 Hb_006794_020 Hb_004800_130--Hb_006794_020 Hb_159295_010 Hb_159295_010 Hb_004800_130--Hb_159295_010 Hb_002631_040 Hb_002631_040 Hb_001080_140--Hb_002631_040 Hb_000866_090 Hb_000866_090 Hb_001080_140--Hb_000866_090 Hb_001080_140--Hb_007765_030 Hb_002524_020 Hb_002524_020 Hb_001080_140--Hb_002524_020 Hb_002968_070 Hb_002968_070 Hb_012940_040--Hb_002968_070 Hb_002016_090 Hb_002016_090 Hb_012940_040--Hb_002016_090 Hb_000260_770 Hb_000260_770 Hb_012940_040--Hb_000260_770 Hb_001171_030 Hb_001171_030 Hb_012940_040--Hb_001171_030 Hb_015183_100 Hb_015183_100 Hb_012940_040--Hb_015183_100 Hb_000174_150 Hb_000174_150 Hb_012940_040--Hb_000174_150 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_004126_080 Hb_004126_080 Hb_148682_010--Hb_004126_080 Hb_001646_010 Hb_001646_010 Hb_148682_010--Hb_001646_010 Hb_004800_240 Hb_004800_240 Hb_148682_010--Hb_004800_240 Hb_001195_020 Hb_001195_020 Hb_148682_010--Hb_001195_020 Hb_001699_150 Hb_001699_150 Hb_148682_010--Hb_001699_150 Hb_044486_040 Hb_044486_040 Hb_148682_010--Hb_044486_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29271 10.5985 8.7059 3.6695 2.31504 3.47285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77952 1.48688 1.73248 10.2351 2.91272

CAGE analysis