Hb_001699_150

Information

Type -
Description -
Location Contig1699: 109547-111358
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13450g
description POPTRDRAFT_804132; hypothetical protein
nr
ID XP_002313724.1
description hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HR87
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_150 0.0 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
2 Hb_001799_190 0.0986663563 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
3 Hb_004126_080 0.1011186164 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
4 Hb_148682_010 0.1026557373 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
5 Hb_001675_010 0.102996166 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
6 Hb_002016_060 0.1077648523 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
7 Hb_003544_070 0.1108499521 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000866_090 0.1112943118 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
9 Hb_002524_020 0.1171258908 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
10 Hb_000362_090 0.118837657 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
11 Hb_004310_040 0.120050998 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000216_020 0.1218768091 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
13 Hb_000371_060 0.1221409483 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
14 Hb_004800_130 0.1226831118 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
15 Hb_008667_060 0.1234840241 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
16 Hb_002812_010 0.1240637482 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
17 Hb_001414_040 0.1242639394 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
18 Hb_001341_160 0.1244097706 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
19 Hb_007765_030 0.1256349146 - - PREDICTED: neutral ceramidase [Jatropha curcas]
20 Hb_002005_120 0.1268809604 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_150 Hb_001699_150 Hb_001799_190 Hb_001799_190 Hb_001699_150--Hb_001799_190 Hb_004126_080 Hb_004126_080 Hb_001699_150--Hb_004126_080 Hb_148682_010 Hb_148682_010 Hb_001699_150--Hb_148682_010 Hb_001675_010 Hb_001675_010 Hb_001699_150--Hb_001675_010 Hb_002016_060 Hb_002016_060 Hb_001699_150--Hb_002016_060 Hb_003544_070 Hb_003544_070 Hb_001699_150--Hb_003544_070 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001799_190--Hb_001675_010 Hb_000395_220 Hb_000395_220 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_002524_020 Hb_002524_020 Hb_001799_190--Hb_002524_020 Hb_004126_080--Hb_148682_010 Hb_004800_240 Hb_004800_240 Hb_004126_080--Hb_004800_240 Hb_001646_010 Hb_001646_010 Hb_004126_080--Hb_001646_010 Hb_001195_020 Hb_001195_020 Hb_004126_080--Hb_001195_020 Hb_159295_010 Hb_159295_010 Hb_004126_080--Hb_159295_010 Hb_148682_010--Hb_001646_010 Hb_148682_010--Hb_004800_240 Hb_148682_010--Hb_001195_020 Hb_044486_040 Hb_044486_040 Hb_148682_010--Hb_044486_040 Hb_001675_010--Hb_002524_020 Hb_000371_060 Hb_000371_060 Hb_001675_010--Hb_000371_060 Hb_001675_010--Hb_003544_070 Hb_002781_010 Hb_002781_010 Hb_001675_010--Hb_002781_010 Hb_015183_100 Hb_015183_100 Hb_002016_060--Hb_015183_100 Hb_004310_040 Hb_004310_040 Hb_002016_060--Hb_004310_040 Hb_000917_100 Hb_000917_100 Hb_002016_060--Hb_000917_100 Hb_002005_120 Hb_002005_120 Hb_002016_060--Hb_002005_120 Hb_000866_080 Hb_000866_080 Hb_002016_060--Hb_000866_080 Hb_000059_020 Hb_000059_020 Hb_002016_060--Hb_000059_020 Hb_000676_040 Hb_000676_040 Hb_003544_070--Hb_000676_040 Hb_003544_070--Hb_002524_020 Hb_003544_070--Hb_001799_190 Hb_008667_060 Hb_008667_060 Hb_003544_070--Hb_008667_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45412 6.34463 2.39589 2.12376 1.6441 1.60221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.730673 0.812779 0.262404 4.38946 1.46181

CAGE analysis