Hb_003544_070

Information

Type -
Description -
Location Contig3544: 50965-58934
Sequence    

Annotation

kegg
ID rcu:RCOM_1192910
description hypothetical protein
nr
ID XP_002520376.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S307
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1192910 PE=4 SV=1
Gene Ontology
ID GO:0003677
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36743: 51562-56182 , PASA_asmbl_36745: 56599-56787 , PASA_asmbl_36746: 56894-57151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001699_150 0.1108499521 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
3 Hb_000676_040 0.1150618618 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
4 Hb_001675_010 0.115358949 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
5 Hb_002524_020 0.1156129349 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
6 Hb_001799_190 0.1190118312 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
7 Hb_008667_060 0.1233688041 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
8 Hb_003398_070 0.1239339133 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
9 Hb_002016_060 0.1259683033 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
10 Hb_012539_110 0.1308376814 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_004994_090 0.1316395916 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
12 Hb_062416_010 0.13447341 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
13 Hb_000371_060 0.1353041198 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
14 Hb_000302_200 0.1413294184 - - ornithine cyclodeaminase, putative [Ricinus communis]
15 Hb_001414_040 0.1422101882 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
16 Hb_000866_090 0.1438748684 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
17 Hb_004108_170 0.1457548193 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002005_120 0.1462945394 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
19 Hb_001268_310 0.1464494974 - - -
20 Hb_007765_030 0.1472919569 - - PREDICTED: neutral ceramidase [Jatropha curcas]

Gene co-expression network

sample Hb_003544_070 Hb_003544_070 Hb_001699_150 Hb_001699_150 Hb_003544_070--Hb_001699_150 Hb_000676_040 Hb_000676_040 Hb_003544_070--Hb_000676_040 Hb_001675_010 Hb_001675_010 Hb_003544_070--Hb_001675_010 Hb_002524_020 Hb_002524_020 Hb_003544_070--Hb_002524_020 Hb_001799_190 Hb_001799_190 Hb_003544_070--Hb_001799_190 Hb_008667_060 Hb_008667_060 Hb_003544_070--Hb_008667_060 Hb_001699_150--Hb_001799_190 Hb_004126_080 Hb_004126_080 Hb_001699_150--Hb_004126_080 Hb_148682_010 Hb_148682_010 Hb_001699_150--Hb_148682_010 Hb_001699_150--Hb_001675_010 Hb_002016_060 Hb_002016_060 Hb_001699_150--Hb_002016_060 Hb_000676_040--Hb_002524_020 Hb_000270_230 Hb_000270_230 Hb_000676_040--Hb_000270_230 Hb_000371_060 Hb_000371_060 Hb_000676_040--Hb_000371_060 Hb_001257_100 Hb_001257_100 Hb_000676_040--Hb_001257_100 Hb_000676_040--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_000676_040--Hb_000059_130 Hb_001675_010--Hb_002524_020 Hb_001675_010--Hb_001799_190 Hb_001675_010--Hb_000371_060 Hb_002781_010 Hb_002781_010 Hb_001675_010--Hb_002781_010 Hb_002524_020--Hb_000371_060 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_001414_040 Hb_001414_040 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_007765_030 Hb_007765_030 Hb_002524_020--Hb_007765_030 Hb_001799_190--Hb_001414_040 Hb_000395_220 Hb_000395_220 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_001799_190--Hb_002524_020 Hb_008667_060--Hb_000059_130 Hb_002477_120 Hb_002477_120 Hb_008667_060--Hb_002477_120 Hb_002471_140 Hb_002471_140 Hb_008667_060--Hb_002471_140 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.59921 2.39115 0.682422 0.891261 0.332829 0.71551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.659776 0.348986 0.0817403 1.65194 0.565466

CAGE analysis