Hb_002471_140

Information

Type -
Description -
Location Contig2471: 120517-126264
Sequence    

Annotation

kegg
ID rcu:RCOM_1149980
description protein binding protein, putative
nr
ID XP_012072368.1
description PREDICTED: protein OBERON 3 [Jatropha curcas]
swissprot
ID Q94B71
description Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1
trembl
ID A0A067L106
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04808 PE=4 SV=1
Gene Ontology
ID GO:0001708
description protein oberon 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25646: 74684-123560 , PASA_asmbl_25650: 120638-126346 , PASA_asmbl_25651: 121836-122379 , PASA_asmbl_25659: 122726-122950
cDNA
(Sanger)
(ID:Location)		 005_G05.ab1: 81340-123560 , 028_J21.ab1: 81419-123560 , 036_F09.ab1: 81311-123560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_140 0.0 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
2 Hb_000345_340 0.0878711011 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
3 Hb_008667_060 0.1026300317 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
4 Hb_000059_130 0.1049792143 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
5 Hb_000866_090 0.1079325467 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
6 Hb_001251_060 0.1139848575 - - aldo/keto reductase AKR [Manihot esculenta]
7 Hb_002477_120 0.114247797 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
8 Hb_001080_140 0.122614983 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
9 Hb_000840_070 0.1233819815 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_000072_020 0.1266748579 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
11 Hb_033363_010 0.1267039237 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
12 Hb_002154_020 0.1271421925 - - protein with unknown function [Ricinus communis]
13 Hb_001842_060 0.1287784139 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
14 Hb_000953_040 0.1299346193 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
15 Hb_000622_280 0.1323765723 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
16 Hb_004800_130 0.1330533944 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
17 Hb_005504_030 0.1340404968 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
18 Hb_002524_020 0.1354610393 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
19 Hb_000802_190 0.1363719125 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
20 Hb_001195_350 0.1370378994 - - hypothetical protein JCGZ_04423 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_140 Hb_002471_140 Hb_000345_340 Hb_000345_340 Hb_002471_140--Hb_000345_340 Hb_008667_060 Hb_008667_060 Hb_002471_140--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_002471_140--Hb_000059_130 Hb_000866_090 Hb_000866_090 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_000345_340--Hb_008667_060 Hb_000271_120 Hb_000271_120 Hb_000345_340--Hb_000271_120 Hb_001080_140 Hb_001080_140 Hb_000345_340--Hb_001080_140 Hb_000345_340--Hb_000866_090 Hb_000345_340--Hb_000059_130 Hb_008667_060--Hb_000059_130 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_000866_090--Hb_001080_140 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_011310_200 Hb_011310_200 Hb_001251_060--Hb_011310_200 Hb_001251_060--Hb_000216_020 Hb_001251_060--Hb_000866_090 Hb_001251_060--Hb_000059_130 Hb_001414_040 Hb_001414_040 Hb_001251_060--Hb_001414_040 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_002477_120--Hb_000802_190 Hb_007007_080 Hb_007007_080 Hb_002477_120--Hb_007007_080 Hb_004032_310 Hb_004032_310 Hb_002477_120--Hb_004032_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1339 59.1077 25.6445 19.6932 5.14605 6.69401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90397 4.41036 7.51293 40.105 13.4461

CAGE analysis