Hb_000805_190

Information

Type transcription factor
Description TF Family: GRAS
Location Contig805: 164878-187583
Sequence    

Annotation

kegg
ID pmum:103323607
description uncharacterized LOC103323607
nr
ID XP_008223833.1
description PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
swissprot
ID Q9XE58
description Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2
trembl
ID D7KH33
description Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678374 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58977: 172325-174864 , PASA_asmbl_58979: 175513-175779 , PASA_asmbl_58980: 184858-188166
cDNA
(Sanger)
(ID:Location)		 012_J04.ab1: 185643-186343

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_190 0.0 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
2 Hb_000056_280 0.0931540149 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
3 Hb_000059_130 0.0955586296 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
4 Hb_000072_020 0.0965155352 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
5 Hb_002235_310 0.1008220823 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
6 Hb_000110_300 0.1040020727 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
7 Hb_033363_010 0.1049440067 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_000111_370 0.1097848368 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
9 Hb_002387_040 0.1136595586 - - protein transporter, putative [Ricinus communis]
10 Hb_000205_250 0.114965456 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
11 Hb_009372_020 0.1151938878 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
12 Hb_000116_210 0.1165867325 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
13 Hb_002151_100 0.1186122906 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
14 Hb_000649_120 0.1186509042 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_001956_060 0.1196229386 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
16 Hb_000120_160 0.1207056739 - - unnamed protein product [Vitis vinifera]
17 Hb_000207_290 0.1210254703 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
18 Hb_004696_070 0.1233803133 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
19 Hb_000340_290 0.1259046586 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
20 Hb_000473_150 0.1259903926 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000805_190 Hb_000805_190 Hb_000056_280 Hb_000056_280 Hb_000805_190--Hb_000056_280 Hb_000059_130 Hb_000059_130 Hb_000805_190--Hb_000059_130 Hb_000072_020 Hb_000072_020 Hb_000805_190--Hb_000072_020 Hb_002235_310 Hb_002235_310 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_033363_010 Hb_033363_010 Hb_000805_190--Hb_033363_010 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_000056_280--Hb_033363_010 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_000072_020--Hb_002235_310 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_000866_110 Hb_000866_110 Hb_002235_310--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_002235_310--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_002235_310--Hb_000125_180 Hb_000649_120 Hb_000649_120 Hb_002235_310--Hb_000649_120 Hb_011925_020 Hb_011925_020 Hb_002235_310--Hb_011925_020 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_001956_060 Hb_001956_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_000110_300--Hb_009646_010 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76025 25.5254 9.2709 15.4657 2.00999 3.98022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13775 3.88616 5.90533 14.7345 10.6938

CAGE analysis