Hb_000465_260

Information

Type transcription factor
Description TF Family: HB
Location Contig465: 226632-228671
Sequence    

Annotation

kegg
ID tcc:TCM_015919
description Homeobox-leucine zipper protein 4 / HD-ZIP protein
nr
ID XP_012070041.1
description PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
swissprot
ID Q05466
description Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1
trembl
ID A0A067L724
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03440 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43984: 226810-228659
cDNA
(Sanger)
(ID:Location)		 035_P19.ab1: 226810-228128 , 044_K24.ab1: 226810-227870

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_260 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
2 Hb_009646_010 0.0846432578 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
3 Hb_000056_280 0.1062372198 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_004631_110 0.1098839562 - - ring finger protein, putative [Ricinus communis]
5 Hb_001818_060 0.1153191384 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
6 Hb_000025_400 0.1224699998 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
7 Hb_033363_010 0.1245032625 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_000009_140 0.1261393725 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
9 Hb_002849_070 0.1284922949 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
10 Hb_000840_070 0.1311527196 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_000056_080 0.1315136877 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
12 Hb_001596_020 0.1317080708 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
13 Hb_005779_030 0.1339193307 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
14 Hb_002151_100 0.1345619228 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
15 Hb_001054_090 0.137838143 - - Potassium channel SKOR, putative [Ricinus communis]
16 Hb_001341_200 0.1398508274 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
17 Hb_000110_300 0.1406776517 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
18 Hb_000072_020 0.1414460356 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
19 Hb_008468_030 0.1423370039 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_001195_350 0.1425881052 - - hypothetical protein JCGZ_04423 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_260 Hb_000465_260 Hb_009646_010 Hb_009646_010 Hb_000465_260--Hb_009646_010 Hb_000056_280 Hb_000056_280 Hb_000465_260--Hb_000056_280 Hb_004631_110 Hb_004631_110 Hb_000465_260--Hb_004631_110 Hb_001818_060 Hb_001818_060 Hb_000465_260--Hb_001818_060 Hb_000025_400 Hb_000025_400 Hb_000465_260--Hb_000025_400 Hb_033363_010 Hb_033363_010 Hb_000465_260--Hb_033363_010 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_000110_300 Hb_000110_300 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_009646_010--Hb_000056_280 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_000056_280--Hb_002151_100 Hb_000056_280--Hb_033363_010 Hb_000840_070 Hb_000840_070 Hb_004631_110--Hb_000840_070 Hb_001195_350 Hb_001195_350 Hb_004631_110--Hb_001195_350 Hb_004631_110--Hb_001818_060 Hb_158696_010 Hb_158696_010 Hb_004631_110--Hb_158696_010 Hb_000059_130 Hb_000059_130 Hb_004631_110--Hb_000059_130 Hb_000200_170 Hb_000200_170 Hb_001818_060--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_001818_060--Hb_002849_070 Hb_001818_060--Hb_001195_350 Hb_000676_040 Hb_000676_040 Hb_001818_060--Hb_000676_040 Hb_008468_030 Hb_008468_030 Hb_000025_400--Hb_008468_030 Hb_000025_400--Hb_000056_280 Hb_002928_120 Hb_002928_120 Hb_000025_400--Hb_002928_120 Hb_005016_020 Hb_005016_020 Hb_000025_400--Hb_005016_020 Hb_000025_400--Hb_004631_110 Hb_033363_010--Hb_000072_020 Hb_000227_320 Hb_000227_320 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39466 29.1051 11.3778 27.3882 1.65444 2.41369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95461 2.7163 3.60279 19.034 7.15477

CAGE analysis