Hb_158696_010

Information

Type -
Description -
Location Contig158696: 33-2611
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072753.1
description PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067KN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14052: 1252-1543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158696_010 0.0 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
2 Hb_004106_010 0.0835815629 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
3 Hb_012787_040 0.0980958908 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
4 Hb_001662_170 0.1063348574 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_003752_120 0.111712583 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
6 Hb_093177_010 0.1151330887 - - Phosphoprotein phosphatase [Theobroma cacao]
7 Hb_004631_110 0.1186218868 - - ring finger protein, putative [Ricinus communis]
8 Hb_004466_070 0.1247616308 - - hypothetical protein RCOM_1447500 [Ricinus communis]
9 Hb_001053_200 0.125622381 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_000544_020 0.1273288012 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
11 Hb_008103_100 0.1295928259 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
12 Hb_000803_060 0.1309732276 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
13 Hb_001608_030 0.1315255826 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
14 Hb_098160_010 0.1336302012 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
15 Hb_033642_070 0.1349318086 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
16 Hb_000172_080 0.1369879207 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
17 Hb_003126_020 0.1424064145 - - Oligopeptide transporter, putative [Ricinus communis]
18 Hb_001951_240 0.1444826291 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
19 Hb_004166_010 0.1487509035 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
20 Hb_103788_010 0.1489821388 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_158696_010 Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_158696_010--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_158696_010--Hb_012787_040 Hb_001662_170 Hb_001662_170 Hb_158696_010--Hb_001662_170 Hb_003752_120 Hb_003752_120 Hb_158696_010--Hb_003752_120 Hb_093177_010 Hb_093177_010 Hb_158696_010--Hb_093177_010 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_004106_010--Hb_001662_170 Hb_004106_010--Hb_093177_010 Hb_004106_010--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_004106_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_004106_010--Hb_008103_100 Hb_012787_040--Hb_003752_120 Hb_000803_060 Hb_000803_060 Hb_012787_040--Hb_000803_060 Hb_012787_040--Hb_001662_170 Hb_011360_090 Hb_011360_090 Hb_012787_040--Hb_011360_090 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_003752_120 Hb_001662_170--Hb_011360_090 Hb_003752_120--Hb_004032_310 Hb_002915_070 Hb_002915_070 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010 Hb_001608_030 Hb_001608_030 Hb_093177_010--Hb_001608_030 Hb_007137_030 Hb_007137_030 Hb_093177_010--Hb_007137_030 Hb_115158_010 Hb_115158_010 Hb_093177_010--Hb_115158_010 Hb_093177_010--Hb_001662_170 Hb_000840_070 Hb_000840_070 Hb_004631_110--Hb_000840_070 Hb_001195_350 Hb_001195_350 Hb_004631_110--Hb_001195_350 Hb_000465_260 Hb_000465_260 Hb_004631_110--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_004631_110--Hb_001818_060 Hb_000059_130 Hb_000059_130 Hb_004631_110--Hb_000059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55175 20.537 4.01936 8.30289 1.32858 1.70497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.644962 0.461294 0.694761 4.83909 3.33686

CAGE analysis