Hb_000059_130

Information

Type transcription factor
Description TF Family: GRAS
Location Contig59: 129067-130827
Sequence    

Annotation

kegg
ID rcu:RCOM_0559420
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_012066104.1
description PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
swissprot
ID Q9SDQ3
description Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1
trembl
ID A0A067LEX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25256 PE=4 SV=1
Gene Ontology
ID GO:0003700
description scarecrow-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50162: 127401-131008 , PASA_asmbl_50165: 128740-128900
cDNA
(Sanger)
(ID:Location)		 026_C08.ab1: 130506-131000 , 029_B12.ab1: 130506-131000

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_130 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
2 Hb_000216_020 0.0799712977 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
3 Hb_008667_060 0.0882107462 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
4 Hb_000473_150 0.0936571967 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
5 Hb_000805_190 0.0955586296 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
6 Hb_000069_780 0.0957137926 - - atpob1, putative [Ricinus communis]
7 Hb_000371_060 0.0962531007 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
8 Hb_000676_040 0.1002744767 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
9 Hb_019863_060 0.1017179392 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
10 Hb_000270_230 0.1032269463 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
11 Hb_002471_140 0.1049792143 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
12 Hb_033363_010 0.1054297679 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
13 Hb_001561_010 0.1063254287 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
14 Hb_000072_020 0.1065398173 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
15 Hb_002154_020 0.107822413 - - protein with unknown function [Ricinus communis]
16 Hb_002387_040 0.1078937445 - - protein transporter, putative [Ricinus communis]
17 Hb_001195_350 0.1156454463 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
18 Hb_002477_120 0.1162164102 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
19 Hb_002447_150 0.1181499556 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_000133_090 0.1199369024 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_130 Hb_000059_130 Hb_000216_020 Hb_000216_020 Hb_000059_130--Hb_000216_020 Hb_008667_060 Hb_008667_060 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000069_780 Hb_000069_780 Hb_000059_130--Hb_000069_780 Hb_000371_060 Hb_000371_060 Hb_000059_130--Hb_000371_060 Hb_003506_020 Hb_003506_020 Hb_000216_020--Hb_003506_020 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_000216_020--Hb_008667_060 Hb_000216_020--Hb_000069_780 Hb_002477_120 Hb_002477_120 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_002471_140 Hb_002471_140 Hb_008667_060--Hb_002471_140 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340 Hb_019863_060 Hb_019863_060 Hb_000473_150--Hb_019863_060 Hb_000413_250 Hb_000413_250 Hb_000473_150--Hb_000413_250 Hb_001951_100 Hb_001951_100 Hb_000473_150--Hb_001951_100 Hb_000445_130 Hb_000445_130 Hb_000473_150--Hb_000445_130 Hb_002918_320 Hb_002918_320 Hb_000473_150--Hb_002918_320 Hb_000056_280 Hb_000056_280 Hb_000805_190--Hb_000056_280 Hb_000072_020 Hb_000072_020 Hb_000805_190--Hb_000072_020 Hb_002235_310 Hb_002235_310 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_033363_010 Hb_033363_010 Hb_000805_190--Hb_033363_010 Hb_000069_780--Hb_000270_230 Hb_006054_030 Hb_006054_030 Hb_000069_780--Hb_006054_030 Hb_001369_780 Hb_001369_780 Hb_000069_780--Hb_001369_780 Hb_002387_040 Hb_002387_040 Hb_000069_780--Hb_002387_040 Hb_003752_120 Hb_003752_120 Hb_000069_780--Hb_003752_120 Hb_001414_040 Hb_001414_040 Hb_000371_060--Hb_001414_040 Hb_000371_060--Hb_002524_020 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3671 83.85 24.268 37.4349 9.83307 10.4803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.92392 7.57393 9.35914 40.7812 25.9377

CAGE analysis