Hb_033363_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig33363: 5479-12848
Sequence    

Annotation

kegg
ID rcu:RCOM_0705580
description hypothetical protein
nr
ID XP_012082025.1
description PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
swissprot
ID Q6NQK2
description NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1
trembl
ID R4N7T7
description NAC transcription factor 092 OS=Jatropha curcas GN=JCGZ_18283 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35001: 5636-12988 , PASA_asmbl_35002: 7560-7954 , PASA_asmbl_35003: 8343-8793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033363_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
2 Hb_000072_020 0.0650845397 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
3 Hb_000227_320 0.0842836754 - - unnamed protein product [Vitis vinifera]
4 Hb_000009_140 0.0904211963 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
5 Hb_000111_370 0.0904445774 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
6 Hb_009372_020 0.0914450174 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
7 Hb_005504_030 0.0936018183 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
8 Hb_010068_070 0.0949552368 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_003964_110 0.0955757354 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
10 Hb_002387_040 0.0960047655 - - protein transporter, putative [Ricinus communis]
11 Hb_005288_050 0.0973141561 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
12 Hb_000805_190 0.1049440067 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
13 Hb_000059_130 0.1054297679 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
14 Hb_002849_070 0.106439184 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
15 Hb_000950_040 0.1075798717 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_001195_350 0.1084619208 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
17 Hb_000056_280 0.11593541 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
18 Hb_000069_780 0.116143778 - - atpob1, putative [Ricinus communis]
19 Hb_000133_090 0.116614767 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
20 Hb_000665_260 0.1167815685 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_033363_010 Hb_033363_010 Hb_000072_020 Hb_000072_020 Hb_033363_010--Hb_000072_020 Hb_000227_320 Hb_000227_320 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000950_040 Hb_000950_040 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_000009_140--Hb_005504_030 Hb_004586_240 Hb_004586_240 Hb_000009_140--Hb_004586_240 Hb_000009_140--Hb_000072_020 Hb_009646_010 Hb_009646_010 Hb_000009_140--Hb_009646_010 Hb_010068_070 Hb_010068_070 Hb_000009_140--Hb_010068_070 Hb_000111_370--Hb_009372_020 Hb_000015_200 Hb_000015_200 Hb_000111_370--Hb_000015_200 Hb_004375_110 Hb_004375_110 Hb_000111_370--Hb_004375_110 Hb_000111_370--Hb_003964_110 Hb_004680_010 Hb_004680_010 Hb_000111_370--Hb_004680_010 Hb_009372_020--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_009372_020--Hb_010068_070 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_009372_020--Hb_003964_110 Hb_005504_030--Hb_004586_240 Hb_000258_090 Hb_000258_090 Hb_005504_030--Hb_000258_090 Hb_005504_030--Hb_000072_020 Hb_005504_030--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.77507 38.6015 23.8466 29.2847 5.99081 5.82127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17591 4.56552 5.78527 24.9286 14.464

CAGE analysis