Hb_002235_310

Information

Type -
Description -
Location Contig2235: 255318-260755
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12170g
description POPTRDRAFT_778532; hypothetical protein
nr
ID XP_012084723.1
description PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067K4J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19864 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23242: 255811-260679 , PASA_asmbl_23244: 258547-260632 , PASA_asmbl_23245: 256614-257232 , PASA_asmbl_23246: 259717-260046 , PASA_asmbl_23247: 260073-260444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_310 0.0 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
2 Hb_000866_110 0.05294252 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
3 Hb_000205_250 0.0557537139 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
4 Hb_000125_180 0.0763647863 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
5 Hb_000649_120 0.0777008864 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_011925_020 0.0868587705 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000072_020 0.0953683836 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
8 Hb_004884_090 0.0969459732 - - importin beta-1, putative [Ricinus communis]
9 Hb_000080_110 0.0972997324 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
10 Hb_000271_120 0.098774518 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
11 Hb_000805_190 0.1008220823 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
12 Hb_002151_100 0.1010887217 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
13 Hb_005181_050 0.106609408 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
14 Hb_000321_090 0.1079893117 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
15 Hb_001956_060 0.1082014232 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
16 Hb_002686_140 0.1091403085 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
17 Hb_053575_020 0.109801853 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
18 Hb_001006_010 0.1102327255 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
19 Hb_000007_410 0.1103429148 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
20 Hb_003124_270 0.1113147608 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_310 Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_002235_310--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_002235_310--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_002235_310--Hb_000125_180 Hb_000649_120 Hb_000649_120 Hb_002235_310--Hb_000649_120 Hb_011925_020 Hb_011925_020 Hb_002235_310--Hb_011925_020 Hb_000072_020 Hb_000072_020 Hb_002235_310--Hb_000072_020 Hb_000866_110--Hb_000205_250 Hb_000866_110--Hb_000125_180 Hb_001006_010 Hb_001006_010 Hb_000866_110--Hb_001006_010 Hb_000866_110--Hb_011925_020 Hb_000271_120 Hb_000271_120 Hb_000866_110--Hb_000271_120 Hb_000205_250--Hb_000271_120 Hb_000205_250--Hb_011925_020 Hb_000205_250--Hb_000125_180 Hb_001956_060 Hb_001956_060 Hb_000205_250--Hb_001956_060 Hb_005181_050 Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110 Hb_000649_120--Hb_000072_020 Hb_000649_120--Hb_000866_110 Hb_000649_120--Hb_000205_250 Hb_000649_120--Hb_000080_110 Hb_000000_120 Hb_000000_120 Hb_000649_120--Hb_000000_120 Hb_000049_250 Hb_000049_250 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_011925_020--Hb_000271_120 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_011925_020--Hb_005181_050 Hb_033363_010 Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67031 16.6448 8.68317 14.2375 2.2966 4.2457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82324 2.87904 6.02116 18.0864 12.8606

CAGE analysis