Hb_000205_250

Information

Type -
Description -
Location Contig205: 300157-303846
Sequence    

Annotation

kegg
ID rcu:RCOM_0609930
description hypothetical protein
nr
ID XP_012089371.1
description PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23566 PE=4 SV=1
Gene Ontology
ID GO:0008466
description vacuolar protein sorting-associated protein 62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21135: 300429-303809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_250 0.0 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
2 Hb_002235_310 0.0557537139 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
3 Hb_000866_110 0.0743171539 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
4 Hb_000271_120 0.0838580956 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
5 Hb_011925_020 0.0851949395 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_000125_180 0.0978362462 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
7 Hb_001956_060 0.1040792453 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
8 Hb_000227_330 0.1045172708 - - Acyl-CoA synthetase [Ricinus communis]
9 Hb_027760_060 0.1098730809 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
10 Hb_000080_110 0.1098978127 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
11 Hb_000049_250 0.1118150832 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
12 Hb_000649_120 0.1127459354 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000331_510 0.1136368933 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
14 Hb_000345_320 0.1136562517 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
15 Hb_128589_010 0.1145742817 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
16 Hb_000805_190 0.114965456 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
17 Hb_002151_100 0.1171634265 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
18 Hb_000072_020 0.1181842241 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
19 Hb_004884_090 0.1183910393 - - importin beta-1, putative [Ricinus communis]
20 Hb_001006_010 0.1186783796 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_250 Hb_000205_250 Hb_002235_310 Hb_002235_310 Hb_000205_250--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000205_250--Hb_000866_110 Hb_000271_120 Hb_000271_120 Hb_000205_250--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_000205_250--Hb_011925_020 Hb_000125_180 Hb_000125_180 Hb_000205_250--Hb_000125_180 Hb_001956_060 Hb_001956_060 Hb_000205_250--Hb_001956_060 Hb_002235_310--Hb_000866_110 Hb_002235_310--Hb_000125_180 Hb_000649_120 Hb_000649_120 Hb_002235_310--Hb_000649_120 Hb_002235_310--Hb_011925_020 Hb_000072_020 Hb_000072_020 Hb_002235_310--Hb_000072_020 Hb_000866_110--Hb_000125_180 Hb_001006_010 Hb_001006_010 Hb_000866_110--Hb_001006_010 Hb_000866_110--Hb_011925_020 Hb_000866_110--Hb_000271_120 Hb_000271_120--Hb_011925_020 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000049_250 Hb_000049_250 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_000271_120--Hb_001006_010 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_000080_110 Hb_000080_110 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000125_180--Hb_000080_110 Hb_000666_010 Hb_000666_010 Hb_001956_060--Hb_000666_010 Hb_000012_240 Hb_000012_240 Hb_001956_060--Hb_000012_240 Hb_000711_010 Hb_000711_010 Hb_001956_060--Hb_000711_010 Hb_128589_010 Hb_128589_010 Hb_001956_060--Hb_128589_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_000110_300 Hb_000110_300 Hb_001956_060--Hb_000110_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63606 10.7529 6.34057 7.40177 1.03405 2.75808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39137 2.26098 3.8617 12.3943 7.40288

CAGE analysis