Hb_000110_300

Information

Type -
Description -
Location Contig110: 322325-326929
Sequence    

Annotation

kegg
ID rcu:RCOM_0353100
description DNA binding protein, putative
nr
ID XP_012082076.1
description PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18314 PE=4 SV=1
Gene Ontology
ID GO:0003682
description agenet domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03074: 322296-326851 , PASA_asmbl_03075: 325289-325427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_300 0.0 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
2 Hb_003747_210 0.0870808848 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
3 Hb_002217_090 0.0924469475 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
4 Hb_002915_060 0.0956881372 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
5 Hb_001956_060 0.1009448621 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
6 Hb_000012_240 0.1033881328 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
7 Hb_009646_010 0.1035573168 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
8 Hb_000805_190 0.1040020727 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
9 Hb_128589_010 0.1044224133 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
10 Hb_000711_010 0.1114105818 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
11 Hb_006816_480 0.1122442708 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
12 Hb_002349_030 0.1137083756 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000912_100 0.1137601338 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
14 Hb_000625_090 0.1141502476 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002151_100 0.1155135252 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
16 Hb_001328_080 0.1158704098 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
17 Hb_002046_060 0.1166253629 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
18 Hb_000699_230 0.1183116944 - - Ankyrin repeat family protein, putative [Theobroma cacao]
19 Hb_009372_020 0.1195433982 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_000926_260 0.120703697 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000110_300 Hb_000110_300 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_001956_060 Hb_001956_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_009646_010 Hb_009646_010 Hb_000110_300--Hb_009646_010 Hb_003747_210--Hb_002217_090 Hb_003747_210--Hb_002915_060 Hb_010661_010 Hb_010661_010 Hb_003747_210--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_003747_210--Hb_004128_030 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200 Hb_001500_030 Hb_001500_030 Hb_002217_090--Hb_001500_030 Hb_002217_090--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_002217_090--Hb_000912_100 Hb_000711_010 Hb_000711_010 Hb_002217_090--Hb_000711_010 Hb_002876_210 Hb_002876_210 Hb_002217_090--Hb_002876_210 Hb_001328_080 Hb_001328_080 Hb_002915_060--Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_002915_060--Hb_007839_020 Hb_011360_050 Hb_011360_050 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_023344_150 Hb_023344_150 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020 Hb_000666_010 Hb_000666_010 Hb_001956_060--Hb_000666_010 Hb_001956_060--Hb_000012_240 Hb_001956_060--Hb_000711_010 Hb_128589_010 Hb_128589_010 Hb_001956_060--Hb_128589_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_000012_240--Hb_000711_010 Hb_000012_240--Hb_000666_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_002349_030 Hb_002349_030 Hb_000012_240--Hb_002349_030 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_009646_010--Hb_128589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.98289 53.6247 21.7799 48.0021 4.75494 8.50401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0179 17.3173 14.3043 33.513 23.3977

CAGE analysis