Hb_007576_200

Information

Type -
Description -
Location Contig7576: 183218-187833
Sequence    

Annotation

kegg
ID rcu:RCOM_0012320
description amino acid transporter, putative
nr
ID XP_002534057.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q99624
description Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=1 SV=1
trembl
ID B9T738
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0012320 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sodium-coupled neutral amino acid transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57135: 183118-183380 , PASA_asmbl_57136: 183437-187946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_200 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_003747_210 0.0990890266 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
3 Hb_000371_060 0.1051752999 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
4 Hb_000676_040 0.1114980327 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
5 Hb_000656_150 0.1131246965 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
6 Hb_000302_200 0.1133794609 - - ornithine cyclodeaminase, putative [Ricinus communis]
7 Hb_002122_080 0.113575959 - - -
8 Hb_000792_040 0.1163240774 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
9 Hb_001414_040 0.1178434819 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
10 Hb_008468_030 0.1221348754 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
11 Hb_000059_130 0.1230127664 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
12 Hb_002928_190 0.1298022094 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
13 Hb_002524_020 0.1305014378 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
14 Hb_001257_100 0.1318690819 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
15 Hb_008221_170 0.1326815851 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
16 Hb_002915_060 0.1329683538 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
17 Hb_011861_080 0.1331608142 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
18 Hb_000997_180 0.1338191031 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005215_020 0.1339790484 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
20 Hb_000270_230 0.134081993 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_200 Hb_007576_200 Hb_003747_210 Hb_003747_210 Hb_007576_200--Hb_003747_210 Hb_000371_060 Hb_000371_060 Hb_007576_200--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_007576_200--Hb_000676_040 Hb_000656_150 Hb_000656_150 Hb_007576_200--Hb_000656_150 Hb_000302_200 Hb_000302_200 Hb_007576_200--Hb_000302_200 Hb_002122_080 Hb_002122_080 Hb_007576_200--Hb_002122_080 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_002217_090 Hb_002217_090 Hb_003747_210--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_010661_010 Hb_010661_010 Hb_003747_210--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_003747_210--Hb_004128_030 Hb_001414_040 Hb_001414_040 Hb_000371_060--Hb_001414_040 Hb_002524_020 Hb_002524_020 Hb_000371_060--Hb_002524_020 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100 Hb_000059_130 Hb_000059_130 Hb_000371_060--Hb_000059_130 Hb_000676_040--Hb_002524_020 Hb_000270_230 Hb_000270_230 Hb_000676_040--Hb_000270_230 Hb_000676_040--Hb_000371_060 Hb_000676_040--Hb_001257_100 Hb_008667_060 Hb_008667_060 Hb_000676_040--Hb_008667_060 Hb_000676_040--Hb_000059_130 Hb_005215_020 Hb_005215_020 Hb_000656_150--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000656_150--Hb_002995_040 Hb_001673_060 Hb_001673_060 Hb_000656_150--Hb_001673_060 Hb_000340_080 Hb_000340_080 Hb_000656_150--Hb_000340_080 Hb_000085_450 Hb_000085_450 Hb_000656_150--Hb_000085_450 Hb_004125_130 Hb_004125_130 Hb_000656_150--Hb_004125_130 Hb_000792_040 Hb_000792_040 Hb_000302_200--Hb_000792_040 Hb_004994_090 Hb_004994_090 Hb_000302_200--Hb_004994_090 Hb_006501_160 Hb_006501_160 Hb_000302_200--Hb_006501_160 Hb_001031_090 Hb_001031_090 Hb_000302_200--Hb_001031_090 Hb_000302_200--Hb_005215_020 Hb_000302_200--Hb_002995_040 Hb_003506_020 Hb_003506_020 Hb_002122_080--Hb_003506_020 Hb_002122_080--Hb_000371_060 Hb_002122_080--Hb_000302_200 Hb_002122_080--Hb_000059_130 Hb_000216_020 Hb_000216_020 Hb_002122_080--Hb_000216_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.2143 158.283 32.9266 89.6249 22.2015 30.0257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.5226 22.8438 39.4395 88.2461 47.0193

CAGE analysis