Hb_001195_350

Information

Type -
Description -
Location Contig1195: 207557-211561
Sequence    

Annotation

kegg
ID vvi:100267756
description uncharacterized protein At1g01500
nr
ID KDP38498.1
description hypothetical protein JCGZ_04423 [Jatropha curcas]
swissprot
ID Q8GUH2
description Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1
trembl
ID A0A067KU32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04423 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05820: 208650-210991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_350 0.0 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
2 Hb_000371_060 0.0921254894 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
3 Hb_010068_070 0.1050420241 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_004631_110 0.1056679507 - - ring finger protein, putative [Ricinus communis]
5 Hb_000840_070 0.1065003812 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_033363_010 0.1084619208 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
7 Hb_002524_020 0.1125121325 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
8 Hb_000270_110 0.1143530781 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
9 Hb_000069_780 0.1144778467 - - atpob1, putative [Ricinus communis]
10 Hb_002387_040 0.1150512586 - - protein transporter, putative [Ricinus communis]
11 Hb_000059_130 0.1156454463 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
12 Hb_001085_300 0.1187265825 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
13 Hb_000676_040 0.1207949611 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
14 Hb_001818_060 0.1210914686 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
15 Hb_001376_010 0.1215536636 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
16 Hb_000270_230 0.1217520459 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
17 Hb_002477_120 0.1228410858 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
18 Hb_000009_140 0.1236843632 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
19 Hb_003752_120 0.1250932382 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
20 Hb_000421_110 0.125777759 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_350 Hb_001195_350 Hb_000371_060 Hb_000371_060 Hb_001195_350--Hb_000371_060 Hb_010068_070 Hb_010068_070 Hb_001195_350--Hb_010068_070 Hb_004631_110 Hb_004631_110 Hb_001195_350--Hb_004631_110 Hb_000840_070 Hb_000840_070 Hb_001195_350--Hb_000840_070 Hb_033363_010 Hb_033363_010 Hb_001195_350--Hb_033363_010 Hb_002524_020 Hb_002524_020 Hb_001195_350--Hb_002524_020 Hb_001414_040 Hb_001414_040 Hb_000371_060--Hb_001414_040 Hb_000371_060--Hb_002524_020 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100 Hb_000059_130 Hb_000059_130 Hb_000371_060--Hb_000059_130 Hb_009372_020 Hb_009372_020 Hb_010068_070--Hb_009372_020 Hb_060094_010 Hb_060094_010 Hb_010068_070--Hb_060094_010 Hb_000890_160 Hb_000890_160 Hb_010068_070--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_010068_070--Hb_000156_090 Hb_010068_070--Hb_033363_010 Hb_002965_050 Hb_002965_050 Hb_010068_070--Hb_002965_050 Hb_004631_110--Hb_000840_070 Hb_000465_260 Hb_000465_260 Hb_004631_110--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_004631_110--Hb_001818_060 Hb_158696_010 Hb_158696_010 Hb_004631_110--Hb_158696_010 Hb_004631_110--Hb_000059_130 Hb_002471_140 Hb_002471_140 Hb_000840_070--Hb_002471_140 Hb_001856_170 Hb_001856_170 Hb_000840_070--Hb_001856_170 Hb_000840_070--Hb_000465_260 Hb_000009_140 Hb_000009_140 Hb_000840_070--Hb_000009_140 Hb_000072_020 Hb_000072_020 Hb_033363_010--Hb_000072_020 Hb_000227_320 Hb_000227_320 Hb_033363_010--Hb_000227_320 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_000676_040 Hb_000676_040 Hb_002524_020--Hb_000676_040 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_007765_030 Hb_007765_030 Hb_002524_020--Hb_007765_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79525 7.72987 3.7815 4.55355 0.704891 1.26712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17197 0.885243 1.11809 3.3836 1.5185

CAGE analysis