Hb_005504_030

Information

Type -
Description -
Location Contig5504: 20057-32235
Sequence    

Annotation

kegg
ID pxb:103928108
description somatic embryogenesis receptor kinase 2-like
nr
ID XP_009335398.1
description PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
swissprot
ID Q9XIC7
description Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1
trembl
ID B9SNC0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0174740 PE=4 SV=1
Gene Ontology
ID GO:0016301
description somatic embryogenesis receptor kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48245: 20152-32229 , PASA_asmbl_48246: 20152-31681 , PASA_asmbl_48247: 31228-31620
cDNA
(Sanger)
(ID:Location)		 044_L13.ab1: 20286-32214

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005504_030 0.0 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
2 Hb_000009_140 0.0790974569 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
3 Hb_004586_240 0.0810927144 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
4 Hb_033363_010 0.0936018183 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
5 Hb_000258_090 0.1085312202 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
6 Hb_000072_020 0.110280595 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
7 Hb_010068_070 0.1123269251 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_000120_310 0.1202269446 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
9 Hb_003964_110 0.1211515194 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
10 Hb_000227_320 0.1220460694 - - unnamed protein product [Vitis vinifera]
11 Hb_000665_260 0.1262239241 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
12 Hb_000271_120 0.1262951662 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
13 Hb_000363_410 0.1275329194 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
14 Hb_027136_040 0.127884387 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
15 Hb_009646_010 0.1285364836 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
16 Hb_000890_160 0.1289379724 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
17 Hb_000567_090 0.1290398539 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
18 Hb_080147_020 0.1292632054 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
19 Hb_001856_170 0.129698558 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
20 Hb_083078_010 0.1298699817 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]

Gene co-expression network

sample Hb_005504_030 Hb_005504_030 Hb_000009_140 Hb_000009_140 Hb_005504_030--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_005504_030--Hb_004586_240 Hb_033363_010 Hb_033363_010 Hb_005504_030--Hb_033363_010 Hb_000258_090 Hb_000258_090 Hb_005504_030--Hb_000258_090 Hb_000072_020 Hb_000072_020 Hb_005504_030--Hb_000072_020 Hb_010068_070 Hb_010068_070 Hb_005504_030--Hb_010068_070 Hb_000009_140--Hb_004586_240 Hb_000009_140--Hb_033363_010 Hb_000009_140--Hb_000072_020 Hb_009646_010 Hb_009646_010 Hb_000009_140--Hb_009646_010 Hb_000009_140--Hb_010068_070 Hb_001856_170 Hb_001856_170 Hb_004586_240--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_004586_240--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_004586_240--Hb_001369_160 Hb_001596_020 Hb_001596_020 Hb_004586_240--Hb_001596_020 Hb_033363_010--Hb_000072_020 Hb_000227_320 Hb_000227_320 Hb_033363_010--Hb_000227_320 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_000007_410 Hb_000007_410 Hb_000258_090--Hb_000007_410 Hb_003964_110 Hb_003964_110 Hb_000258_090--Hb_003964_110 Hb_027760_060 Hb_027760_060 Hb_000258_090--Hb_027760_060 Hb_158845_060 Hb_158845_060 Hb_000258_090--Hb_158845_060 Hb_000599_360 Hb_000599_360 Hb_000258_090--Hb_000599_360 Hb_000072_020--Hb_000227_320 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_010068_070--Hb_009372_020 Hb_060094_010 Hb_060094_010 Hb_010068_070--Hb_060094_010 Hb_000890_160 Hb_000890_160 Hb_010068_070--Hb_000890_160 Hb_000156_090 Hb_000156_090 Hb_010068_070--Hb_000156_090 Hb_010068_070--Hb_033363_010 Hb_002965_050 Hb_002965_050 Hb_010068_070--Hb_002965_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.5411 370.684 336.219 301.486 48.4824 67.5041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.4645 61.3041 49.3498 397.987 148.98

CAGE analysis