Hb_001369_160

Information

Type -
Description -
Location Contig1369: 142087-145964
Sequence    

Annotation

kegg
ID rcu:RCOM_1500870
description hypothetical protein
nr
ID XP_012090465.1
description PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26274 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10144: 142097-146038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_160 0.0 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
2 Hb_000120_310 0.0969418475 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
3 Hb_001856_170 0.1019935078 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
4 Hb_002662_090 0.1143978273 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
5 Hb_001596_020 0.1213609347 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
6 Hb_002447_150 0.1234825644 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_003894_100 0.1261126123 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
8 Hb_004586_240 0.1262945182 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
9 Hb_115513_040 0.1263027005 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005880_010 0.1271286047 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
11 Hb_003050_150 0.1283761948 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
12 Hb_000216_020 0.1324792274 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
13 Hb_000778_020 0.1341764382 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_001832_210 0.1364574862 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
15 Hb_001488_280 0.1407376138 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
16 Hb_000997_340 0.1418613926 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_005504_030 0.142614393 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
18 Hb_002471_140 0.1433245753 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
19 Hb_002781_010 0.1433726914 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
20 Hb_008175_030 0.1434371502 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_160 Hb_001369_160 Hb_000120_310 Hb_000120_310 Hb_001369_160--Hb_000120_310 Hb_001856_170 Hb_001856_170 Hb_001369_160--Hb_001856_170 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_001596_020 Hb_001596_020 Hb_001369_160--Hb_001596_020 Hb_002447_150 Hb_002447_150 Hb_001369_160--Hb_002447_150 Hb_003894_100 Hb_003894_100 Hb_001369_160--Hb_003894_100 Hb_000120_310--Hb_001856_170 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_000120_310--Hb_001596_020 Hb_002833_020 Hb_002833_020 Hb_000120_310--Hb_002833_020 Hb_004586_240 Hb_004586_240 Hb_000120_310--Hb_004586_240 Hb_001856_170--Hb_004586_240 Hb_006831_080 Hb_006831_080 Hb_001856_170--Hb_006831_080 Hb_001856_170--Hb_001596_020 Hb_000009_140 Hb_000009_140 Hb_001856_170--Hb_000009_140 Hb_001842_060 Hb_001842_060 Hb_002662_090--Hb_001842_060 Hb_002928_180 Hb_002928_180 Hb_002662_090--Hb_002928_180 Hb_004286_030 Hb_004286_030 Hb_002662_090--Hb_004286_030 Hb_010174_190 Hb_010174_190 Hb_002662_090--Hb_010174_190 Hb_002662_090--Hb_003894_100 Hb_001596_020--Hb_006831_080 Hb_001596_020--Hb_004586_240 Hb_001178_080 Hb_001178_080 Hb_001596_020--Hb_001178_080 Hb_000059_130 Hb_000059_130 Hb_002447_150--Hb_000059_130 Hb_000216_020 Hb_000216_020 Hb_002447_150--Hb_000216_020 Hb_002447_150--Hb_003894_100 Hb_008667_060 Hb_008667_060 Hb_002447_150--Hb_008667_060 Hb_115513_040 Hb_115513_040 Hb_002447_150--Hb_115513_040 Hb_003894_100--Hb_008667_060 Hb_000589_220 Hb_000589_220 Hb_003894_100--Hb_000589_220 Hb_003894_100--Hb_002928_180 Hb_002122_080 Hb_002122_080 Hb_003894_100--Hb_002122_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89449 20.385 9.28485 12.8719 2.94302 3.69888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23972 1.31944 0.428732 18.8948 5.18905

CAGE analysis