Hb_001488_280

Information

Type -
Description -
Location Contig1488: 185336-187355
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13000g
description POPTRDRAFT_577758; hypothetical protein
nr
ID KDP27248.1
description hypothetical protein JCGZ_19947 [Jatropha curcas]
swissprot
ID Q9LMX5
description Ninja-family protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1
trembl
ID A0A067JWV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19947 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12323: 185375-187243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_280 0.0 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
2 Hb_000120_310 0.1045036067 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
3 Hb_009898_030 0.1254746391 - - PREDICTED: uncharacterized protein LOC103720281 [Phoenix dactylifera]
4 Hb_002833_020 0.1270222735 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_000417_280 0.1293135636 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000574_370 0.1336753764 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_005880_010 0.1403029473 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
8 Hb_002660_040 0.1403282334 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
9 Hb_001369_160 0.1407376138 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
10 Hb_001008_110 0.1444648759 - - -
11 Hb_002093_050 0.1463197357 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
12 Hb_153257_010 0.1496183853 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
13 Hb_115513_040 0.1521053316 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002030_170 0.1528216237 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
15 Hb_002235_190 0.1554175459 - - conserved hypothetical protein [Ricinus communis]
16 Hb_159411_010 0.1584699572 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_004656_010 0.1606668486 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
18 Hb_000197_230 0.1614170163 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
19 Hb_004096_220 0.164856428 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
20 Hb_009193_060 0.1650093772 - - PREDICTED: ureide permease 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001488_280 Hb_001488_280 Hb_000120_310 Hb_000120_310 Hb_001488_280--Hb_000120_310 Hb_009898_030 Hb_009898_030 Hb_001488_280--Hb_009898_030 Hb_002833_020 Hb_002833_020 Hb_001488_280--Hb_002833_020 Hb_000417_280 Hb_000417_280 Hb_001488_280--Hb_000417_280 Hb_000574_370 Hb_000574_370 Hb_001488_280--Hb_000574_370 Hb_005880_010 Hb_005880_010 Hb_001488_280--Hb_005880_010 Hb_001856_170 Hb_001856_170 Hb_000120_310--Hb_001856_170 Hb_001369_160 Hb_001369_160 Hb_000120_310--Hb_001369_160 Hb_001596_020 Hb_001596_020 Hb_000120_310--Hb_001596_020 Hb_000120_310--Hb_002833_020 Hb_004586_240 Hb_004586_240 Hb_000120_310--Hb_004586_240 Hb_002660_040 Hb_002660_040 Hb_009898_030--Hb_002660_040 Hb_002030_170 Hb_002030_170 Hb_009898_030--Hb_002030_170 Hb_025526_080 Hb_025526_080 Hb_009898_030--Hb_025526_080 Hb_001008_110 Hb_001008_110 Hb_009898_030--Hb_001008_110 Hb_009898_030--Hb_000120_310 Hb_002833_020--Hb_001008_110 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_000417_280--Hb_001008_110 Hb_032717_010 Hb_032717_010 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_001268_300 Hb_001268_300 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_000139_510 Hb_000139_510 Hb_000574_370--Hb_000139_510 Hb_002603_010 Hb_002603_010 Hb_000574_370--Hb_002603_010 Hb_000574_370--Hb_001268_300 Hb_000574_370--Hb_009193_060 Hb_000574_370--Hb_002833_020 Hb_008175_030 Hb_008175_030 Hb_005880_010--Hb_008175_030 Hb_005880_010--Hb_002833_020 Hb_005880_010--Hb_002660_040 Hb_000778_020 Hb_000778_020 Hb_005880_010--Hb_000778_020 Hb_000261_320 Hb_000261_320 Hb_005880_010--Hb_000261_320 Hb_005880_010--Hb_001369_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6095 11.6067 9.63239 7.68318 1.60952 2.51164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128263 0.277494 0.426183 17.8589 5.95784

CAGE analysis