Hb_001268_300

Information

Type -
Description -
Location Contig1268: 297718-300063
Sequence    

Annotation

kegg
ID rcu:RCOM_1447040
description hypothetical protein
nr
ID XP_002512897.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P19963
description Major pollen allergen Ole e 1 OS=Olea europaea PE=1 SV=2
trembl
ID B9RH38
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_300 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003517_100 0.1015505509 transcription factor TF Family: GRAS -
3 Hb_000417_280 0.1032831071 - - conserved hypothetical protein [Ricinus communis]
4 Hb_042202_020 0.105789388 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
5 Hb_009193_060 0.1065393428 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
6 Hb_082683_010 0.1075489164 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_073973_020 0.1075717349 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
8 Hb_001307_200 0.109501465 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
9 Hb_002888_040 0.1123167102 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
10 Hb_004096_220 0.1139654815 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
11 Hb_032717_010 0.1169860597 - - unnamed protein product [Vitis vinifera]
12 Hb_001008_110 0.1218041509 - - -
13 Hb_002833_020 0.1236827994 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_000527_140 0.1285221857 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
15 Hb_000574_370 0.1332918545 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
16 Hb_002811_020 0.1333354027 - - Cysteine synthase [Morus notabilis]
17 Hb_002078_240 0.1334232396 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
18 Hb_002003_040 0.1370539297 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
19 Hb_002888_060 0.137542101 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
20 Hb_000261_320 0.1381515196 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001268_300 Hb_001268_300 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_000522_010 Hb_000522_010 Hb_003517_100--Hb_000522_010 Hb_002888_040 Hb_002888_040 Hb_003517_100--Hb_002888_040 Hb_000365_220 Hb_000365_220 Hb_003517_100--Hb_000365_220 Hb_000417_410 Hb_000417_410 Hb_003517_100--Hb_000417_410 Hb_008494_090 Hb_008494_090 Hb_003517_100--Hb_008494_090 Hb_001008_110 Hb_001008_110 Hb_000417_280--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_000417_280--Hb_002833_020 Hb_032717_010 Hb_032717_010 Hb_000417_280--Hb_032717_010 Hb_000417_280--Hb_009193_060 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_042202_020--Hb_001008_110 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060 Hb_003106_110 Hb_003106_110 Hb_009193_060--Hb_003106_110 Hb_009193_060--Hb_001008_110 Hb_011537_020 Hb_011537_020 Hb_009193_060--Hb_011537_020 Hb_004096_220 Hb_004096_220 Hb_009193_060--Hb_004096_220 Hb_002420_010 Hb_002420_010 Hb_082683_010--Hb_002420_010 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_001677_230 Hb_001677_230 Hb_082683_010--Hb_001677_230 Hb_001307_200 Hb_001307_200 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_073973_020--Hb_000417_410 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175497 2.83696 1.74762 1.79939 0.181281 0.174258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.04003 0.236235 0.0898423 3.44902 2.70408

CAGE analysis