Hb_003517_100

Information

Type transcription factor
Description TF Family: GRAS
Location Contig3517: 148710-151913
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36543: 146029-150492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_100 0.0 transcription factor TF Family: GRAS -
2 Hb_001268_300 0.1015505509 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000522_010 0.1034148662 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
4 Hb_002888_040 0.1060683082 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
5 Hb_000365_220 0.1070828905 - - protein phosphatase-1, putative [Ricinus communis]
6 Hb_000417_410 0.1275822043 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
7 Hb_008494_090 0.131730627 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
8 Hb_001819_010 0.1335324206 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
9 Hb_000191_100 0.1367104886 - - cytochrome P450, putative [Ricinus communis]
10 Hb_073973_020 0.1387617639 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
11 Hb_003007_030 0.140012869 - - -
12 Hb_042202_020 0.1412501278 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
13 Hb_001689_030 0.1417419762 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
14 Hb_023344_130 0.1430831889 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_001956_080 0.1437172557 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
16 Hb_002217_070 0.144825587 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
17 Hb_005488_030 0.1450564353 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
18 Hb_001307_200 0.1461480356 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
19 Hb_004605_020 0.1473380306 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
20 Hb_003077_140 0.148649547 - - hypothetical protein JCGZ_16294 [Jatropha curcas]

Gene co-expression network

sample Hb_003517_100 Hb_003517_100 Hb_001268_300 Hb_001268_300 Hb_003517_100--Hb_001268_300 Hb_000522_010 Hb_000522_010 Hb_003517_100--Hb_000522_010 Hb_002888_040 Hb_002888_040 Hb_003517_100--Hb_002888_040 Hb_000365_220 Hb_000365_220 Hb_003517_100--Hb_000365_220 Hb_000417_410 Hb_000417_410 Hb_003517_100--Hb_000417_410 Hb_008494_090 Hb_008494_090 Hb_003517_100--Hb_008494_090 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_000522_010--Hb_008494_090 Hb_000522_010--Hb_000365_220 Hb_000522_010--Hb_000417_410 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020 Hb_002888_040--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_002888_040--Hb_001268_300 Hb_000365_220--Hb_008494_090 Hb_000365_220--Hb_000417_410 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020 Hb_000417_410--Hb_026698_020 Hb_000417_410--Hb_073973_020 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_025045_010 Hb_025045_010 Hb_008494_090--Hb_025045_010 Hb_003680_010 Hb_003680_010 Hb_008494_090--Hb_003680_010 Hb_067664_010 Hb_067664_010 Hb_008494_090--Hb_067664_010 Hb_008494_090--Hb_002888_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.702444 18.219 11.7489 11.3873 0.166289 0.803848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.542263 1.77236 0.187065 17.0033 21.5114

CAGE analysis