Hb_000522_010

Information

Type -
Description -
Location Contig522: 3980-7099
Sequence    

Annotation

kegg
ID rcu:RCOM_0491880
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_012069803.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
swissprot
ID O04847
description Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2
trembl
ID A0A067KW00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02305 PE=3 SV=1
Gene Ontology
ID GO:0046872
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46831: 4036-6792 , PASA_asmbl_46832: 6103-6221 , PASA_asmbl_46833: 6813-7015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_010 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
2 Hb_008494_090 0.0869065421 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
3 Hb_000365_220 0.0904695033 - - protein phosphatase-1, putative [Ricinus communis]
4 Hb_003517_100 0.1034148662 transcription factor TF Family: GRAS -
5 Hb_000417_410 0.1181211036 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
6 Hb_002888_040 0.1269669313 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
7 Hb_004605_020 0.1289615682 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
8 Hb_073973_020 0.1364345151 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
9 Hb_001951_230 0.1408092676 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
10 Hb_005488_030 0.1430234759 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
11 Hb_001307_200 0.1446471752 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
12 Hb_001556_020 0.1450476991 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
13 Hb_002217_070 0.1457541003 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
14 Hb_003177_090 0.1483993173 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
15 Hb_005305_030 0.149500587 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
16 Hb_001689_030 0.1496094692 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
17 Hb_083242_020 0.1521767187 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
18 Hb_000203_210 0.1530489676 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
19 Hb_026698_020 0.1545591921 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_003517_090 0.1566787858 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000522_010 Hb_000522_010 Hb_008494_090 Hb_008494_090 Hb_000522_010--Hb_008494_090 Hb_000365_220 Hb_000365_220 Hb_000522_010--Hb_000365_220 Hb_003517_100 Hb_003517_100 Hb_000522_010--Hb_003517_100 Hb_000417_410 Hb_000417_410 Hb_000522_010--Hb_000417_410 Hb_002888_040 Hb_002888_040 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020 Hb_008494_090--Hb_000365_220 Hb_025045_010 Hb_025045_010 Hb_008494_090--Hb_025045_010 Hb_003680_010 Hb_003680_010 Hb_008494_090--Hb_003680_010 Hb_067664_010 Hb_067664_010 Hb_008494_090--Hb_067664_010 Hb_008494_090--Hb_002888_040 Hb_000365_220--Hb_000417_410 Hb_000365_220--Hb_002888_040 Hb_000365_220--Hb_003517_100 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020 Hb_001268_300 Hb_001268_300 Hb_003517_100--Hb_001268_300 Hb_003517_100--Hb_002888_040 Hb_003517_100--Hb_000417_410 Hb_003517_100--Hb_008494_090 Hb_026698_020 Hb_026698_020 Hb_000417_410--Hb_026698_020 Hb_073973_020 Hb_073973_020 Hb_000417_410--Hb_073973_020 Hb_000417_410--Hb_002888_040 Hb_001307_200 Hb_001307_200 Hb_000417_410--Hb_001307_200 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_002888_040--Hb_001268_300 Hb_061908_020 Hb_061908_020 Hb_004605_020--Hb_061908_020 Hb_027337_030 Hb_027337_030 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32987 21.6689 11.9781 13.0365 0.0137495 0.689829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24205 0.73712 0.789491 15.6916 26.0378

CAGE analysis