Hb_001307_200

Information

Type -
Description -
Location Contig1307: 172414-180711
Sequence    

Annotation

kegg
ID pop:POPTR_0014s18810g
description POPTRDRAFT_573364; hypothetical protein
nr
ID XP_012085248.1
description PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IBB2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18810g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09112: 173885-177100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_200 0.0 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
2 Hb_073973_020 0.0561109282 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
3 Hb_004096_220 0.1011259284 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
4 Hb_001268_300 0.109501465 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002888_040 0.1126760609 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
6 Hb_000221_180 0.1141078862 - - VQ motif-containing family protein [Populus trichocarpa]
7 Hb_000417_410 0.1145597993 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
8 Hb_000256_160 0.1146975884 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
9 Hb_042202_020 0.1172496384 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
10 Hb_000438_020 0.1182636407 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
11 Hb_001404_090 0.1185390332 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
12 Hb_005588_120 0.1193021833 - - conserved hypothetical protein [Ricinus communis]
13 Hb_083078_010 0.1220282162 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
14 Hb_011853_010 0.1221822819 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
15 Hb_001496_120 0.1258746984 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
16 Hb_002833_020 0.1282119947 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_000261_310 0.1301084821 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
18 Hb_000139_510 0.1325826732 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
19 Hb_132840_030 0.1327080027 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
20 Hb_001821_060 0.1333066747 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_200 Hb_001307_200 Hb_073973_020 Hb_073973_020 Hb_001307_200--Hb_073973_020 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001268_300 Hb_001268_300 Hb_001307_200--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_001307_200--Hb_002888_040 Hb_000221_180 Hb_000221_180 Hb_001307_200--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_001307_200--Hb_000417_410 Hb_073973_020--Hb_000221_180 Hb_073973_020--Hb_000417_410 Hb_073973_020--Hb_001268_300 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_000261_310 Hb_000261_310 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_004096_220--Hb_001268_300 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_000365_220 Hb_000365_220 Hb_002888_040--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_002888_040--Hb_001268_300 Hb_014006_010 Hb_014006_010 Hb_000221_180--Hb_014006_010 Hb_000175_270 Hb_000175_270 Hb_000221_180--Hb_000175_270 Hb_000221_180--Hb_001496_120 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_000417_410--Hb_000365_220 Hb_000417_410--Hb_026698_020 Hb_000417_410--Hb_002888_040 Hb_000522_010 Hb_000522_010 Hb_000417_410--Hb_000522_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.262728 3.19555 2.07329 2.29387 0.384943 0.283063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.415462 0.211516 0.254733 3.49091 3.36549

CAGE analysis