Hb_000261_310

Information

Type -
Description -
Location Contig261: 267182-271765
Sequence    

Annotation

kegg
ID rcu:RCOM_1019110
description hypothetical protein
nr
ID XP_012071124.1
description PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01113 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27283: 265771-270263 , PASA_asmbl_27284: 269211-271294 , PASA_asmbl_27285: 268096-268557 , PASA_asmbl_27286: 268655-268880 , PASA_asmbl_27287: 267341-267602
cDNA
(Sanger)
(ID:Location)		 021_L20.ab1: 265772-269004 , 024_H05.ab1: 265771-268976

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_310 0.0 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
2 Hb_000256_160 0.0935358585 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
3 Hb_000309_030 0.0948939203 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
4 Hb_000094_150 0.097339856 - - -
5 Hb_000116_240 0.098830172 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
6 Hb_007575_030 0.1001376733 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
7 Hb_004096_220 0.1038342138 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
8 Hb_010407_030 0.1119058474 - - PREDICTED: casein kinase I-like [Jatropha curcas]
9 Hb_004883_020 0.1144343643 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
10 Hb_002010_090 0.115031578 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_006949_060 0.1163142926 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
12 Hb_000248_100 0.1183039049 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
13 Hb_000438_010 0.1185888204 - - -
14 Hb_000590_070 0.1202452221 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
15 Hb_011174_080 0.1211802075 - - PREDICTED: sulfite oxidase [Jatropha curcas]
16 Hb_000318_170 0.1211815787 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
17 Hb_007229_050 0.1242883215 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
18 Hb_001235_130 0.1245587072 - - -
19 Hb_004129_010 0.1247297064 - - aspartate aminotransferase, putative [Ricinus communis]
20 Hb_029584_100 0.1275967337 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]

Gene co-expression network

sample Hb_000261_310 Hb_000261_310 Hb_000256_160 Hb_000256_160 Hb_000261_310--Hb_000256_160 Hb_000309_030 Hb_000309_030 Hb_000261_310--Hb_000309_030 Hb_000094_150 Hb_000094_150 Hb_000261_310--Hb_000094_150 Hb_000116_240 Hb_000116_240 Hb_000261_310--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000261_310--Hb_007575_030 Hb_004096_220 Hb_004096_220 Hb_000261_310--Hb_004096_220 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_000256_160--Hb_000094_150 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_000309_030--Hb_000116_240 Hb_004883_020 Hb_004883_020 Hb_000309_030--Hb_004883_020 Hb_000318_170 Hb_000318_170 Hb_000309_030--Hb_000318_170 Hb_010050_020 Hb_010050_020 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070 Hb_000094_150--Hb_002010_090 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_005485_070 Hb_005485_070 Hb_000116_240--Hb_005485_070 Hb_000116_240--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_000116_240--Hb_001277_400 Hb_000116_240--Hb_000318_170 Hb_007575_030--Hb_004883_020 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_007575_030--Hb_000116_240 Hb_007575_030--Hb_000318_170 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.191479 1.24265 1.50224 1.86405 0.239633 0.289188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.236861 0.298079 0.0688194 1.94544 1.53024

CAGE analysis