Hb_002010_090

Information

Type -
Description -
Location Contig2010: 77087-83859
Sequence    

Annotation

kegg
ID rcu:RCOM_0407810
description fad oxidoreductase, putative (EC:2.1.2.10)
nr
ID XP_012071322.1
description PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
swissprot
ID Q3AET7
description Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=gcvT PE=3 SV=1
trembl
ID A0A067KV53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05010 PE=3 SV=1
Gene Ontology
ID GO:0005739
description dimethylglycine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20435: 77142-83207 , PASA_asmbl_20436: 81666-83207 , PASA_asmbl_20437: 81666-81974 , PASA_asmbl_20438: 83445-83711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002010_090 0.0 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
2 Hb_000230_530 0.0764669515 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006816_010 0.0834041945 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000094_150 0.0863074703 - - -
5 Hb_000256_160 0.0919322094 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
6 Hb_000510_190 0.0956674306 - - glutathione reductase [Hevea brasiliensis]
7 Hb_011188_010 0.0971982278 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
8 Hb_009296_020 0.1002282377 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
9 Hb_004162_220 0.1039448327 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
10 Hb_000487_370 0.1041123101 - - -
11 Hb_003226_090 0.1044065536 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
12 Hb_000594_060 0.104442862 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
13 Hb_013968_010 0.112641257 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
14 Hb_003490_060 0.1129567029 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
15 Hb_005854_040 0.1131891154 - - conserved hypothetical protein [Ricinus communis]
16 Hb_101334_020 0.1133718201 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
17 Hb_000261_310 0.115031578 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
18 Hb_001821_060 0.115274171 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
19 Hb_000500_220 0.1164826452 - - PREDICTED: intersectin-1 [Jatropha curcas]
20 Hb_000248_100 0.1205297386 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]

Gene co-expression network

sample Hb_002010_090 Hb_002010_090 Hb_000230_530 Hb_000230_530 Hb_002010_090--Hb_000230_530 Hb_006816_010 Hb_006816_010 Hb_002010_090--Hb_006816_010 Hb_000094_150 Hb_000094_150 Hb_002010_090--Hb_000094_150 Hb_000256_160 Hb_000256_160 Hb_002010_090--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_002010_090--Hb_000510_190 Hb_011188_010 Hb_011188_010 Hb_002010_090--Hb_011188_010 Hb_101334_020 Hb_101334_020 Hb_000230_530--Hb_101334_020 Hb_009296_020 Hb_009296_020 Hb_000230_530--Hb_009296_020 Hb_000594_060 Hb_000594_060 Hb_000230_530--Hb_000594_060 Hb_000230_530--Hb_000510_190 Hb_000496_130 Hb_000496_130 Hb_000230_530--Hb_000496_130 Hb_006816_010--Hb_000510_190 Hb_004162_220 Hb_004162_220 Hb_006816_010--Hb_004162_220 Hb_000487_370 Hb_000487_370 Hb_006816_010--Hb_000487_370 Hb_007576_180 Hb_007576_180 Hb_006816_010--Hb_007576_180 Hb_003490_060 Hb_003490_060 Hb_006816_010--Hb_003490_060 Hb_000094_150--Hb_000256_160 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_000261_310 Hb_000261_310 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_000510_190--Hb_009296_020 Hb_000510_190--Hb_003490_060 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27661 14.317 27.6556 19.2282 5.41825 3.82788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58527 6.39066 1.98595 22.9469 26.376

CAGE analysis