Hb_004162_220

Information

Type -
Description -
Location Contig4162: 195057-199588
Sequence    

Annotation

kegg
ID rcu:RCOM_0475420
description pheophorbide A oxygenase, putative
nr
ID XP_012064674.1
description PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYC2
description Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1
trembl
ID A0A067LI95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05421 PE=4 SV=1
Gene Ontology
ID GO:0009534
description pheophorbide a chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41190: 195036-200333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_220 0.0 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
2 Hb_003058_140 0.082492866 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004577_010 0.0897991234 - - PREDICTED: transmembrane protein 45A [Prunus mume]
4 Hb_000172_360 0.0900296907 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
5 Hb_000976_110 0.0964352892 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
6 Hb_006816_010 0.0981728807 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000109_260 0.0985566168 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
8 Hb_000260_160 0.1036165131 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
9 Hb_002010_090 0.1039448327 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_000300_560 0.1046876941 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
11 Hb_011188_010 0.1052548559 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
12 Hb_000665_070 0.1052597359 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
13 Hb_011674_040 0.1052671564 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
14 Hb_001998_210 0.110173714 - - unnamed protein product [Coffea canephora]
15 Hb_000617_250 0.1141800923 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
16 Hb_000482_050 0.114518857 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
17 Hb_009158_060 0.1147389842 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
18 Hb_003490_060 0.1148920885 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
19 Hb_143629_020 0.1154571845 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
20 Hb_013358_060 0.1163188088 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_220 Hb_004162_220 Hb_003058_140 Hb_003058_140 Hb_004162_220--Hb_003058_140 Hb_004577_010 Hb_004577_010 Hb_004162_220--Hb_004577_010 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_006816_010 Hb_006816_010 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_003058_140--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_003058_140--Hb_005305_100 Hb_001159_060 Hb_001159_060 Hb_003058_140--Hb_001159_060 Hb_009158_060 Hb_009158_060 Hb_003058_140--Hb_009158_060 Hb_000137_010 Hb_000137_010 Hb_003058_140--Hb_000137_010 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_011188_010 Hb_011188_010 Hb_004577_010--Hb_011188_010 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_004577_010--Hb_003058_140 Hb_000172_360--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_000172_360--Hb_000260_760 Hb_008165_020 Hb_008165_020 Hb_000172_360--Hb_008165_020 Hb_000172_360--Hb_009158_060 Hb_000172_360--Hb_001159_060 Hb_011674_040 Hb_011674_040 Hb_000976_110--Hb_011674_040 Hb_000976_110--Hb_000109_260 Hb_000009_030 Hb_000009_030 Hb_000976_110--Hb_000009_030 Hb_003490_060 Hb_003490_060 Hb_000976_110--Hb_003490_060 Hb_000318_150 Hb_000318_150 Hb_000976_110--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000976_110--Hb_000787_200 Hb_002010_090 Hb_002010_090 Hb_006816_010--Hb_002010_090 Hb_000510_190 Hb_000510_190 Hb_006816_010--Hb_000510_190 Hb_000487_370 Hb_000487_370 Hb_006816_010--Hb_000487_370 Hb_007576_180 Hb_007576_180 Hb_006816_010--Hb_007576_180 Hb_006816_010--Hb_003490_060 Hb_000109_260--Hb_003490_060 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_000109_260--Hb_011674_040 Hb_000109_260--Hb_000009_030 Hb_003490_050 Hb_003490_050 Hb_000109_260--Hb_003490_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.6306 16.0508 20.3672 11.2775 5.16417 5.14435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6181 5.87256 1.43049 15.4245 20.5834

CAGE analysis