Hb_001663_130

Information

Type -
Description -
Location Contig1663: 92192-95210
Sequence    

Annotation

kegg
ID rcu:RCOM_0101390
description acyl-CoA thioesterase, putative
nr
ID XP_002532453.1
description acyl-CoA thioesterase, putative [Ricinus communis]
swissprot
ID Q9R0X4
description Acyl-coenzyme A thioesterase 9, mitochondrial OS=Mus musculus GN=Acot9 PE=1 SV=1
trembl
ID B9T2I4
description Acyl-CoA thioesterase, putative OS=Ricinus communis GN=RCOM_0101390 PE=4 SV=1
Gene Ontology
ID GO:0005777
description acyl-coenzyme a thioesterase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15363: 92291-94990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_130 0.0 - - acyl-CoA thioesterase, putative [Ricinus communis]
2 Hb_000300_560 0.081433573 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
3 Hb_003894_060 0.0828692518 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001160_110 0.084379538 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
5 Hb_007594_080 0.0890095606 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
6 Hb_002447_050 0.089451252 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_011188_010 0.0903408302 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
8 Hb_002026_090 0.0905832144 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
9 Hb_004577_010 0.0909965747 - - PREDICTED: transmembrane protein 45A [Prunus mume]
10 Hb_000594_060 0.0915109321 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
11 Hb_001396_020 0.0941456376 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_001623_490 0.0987695444 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
13 Hb_012779_080 0.0994447897 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
14 Hb_003683_030 0.1006220128 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
15 Hb_001279_020 0.1014164663 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
16 Hb_004837_210 0.1032904762 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
17 Hb_002432_050 0.103668427 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
18 Hb_003175_070 0.1040543136 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
19 Hb_001001_090 0.1041439382 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
20 Hb_005665_090 0.1054897886 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001663_130 Hb_001663_130 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_001396_020 Hb_001396_020 Hb_000300_560--Hb_001396_020 Hb_000300_560--Hb_011188_010 Hb_000482_050 Hb_000482_050 Hb_000300_560--Hb_000482_050 Hb_004577_010 Hb_004577_010 Hb_000300_560--Hb_004577_010 Hb_021596_020 Hb_021596_020 Hb_000300_560--Hb_021596_020 Hb_001279_020 Hb_001279_020 Hb_000300_560--Hb_001279_020 Hb_003683_030 Hb_003683_030 Hb_003894_060--Hb_003683_030 Hb_005214_070 Hb_005214_070 Hb_003894_060--Hb_005214_070 Hb_000093_140 Hb_000093_140 Hb_003894_060--Hb_000093_140 Hb_001001_090 Hb_001001_090 Hb_003894_060--Hb_001001_090 Hb_002432_050 Hb_002432_050 Hb_003894_060--Hb_002432_050 Hb_003687_080 Hb_003687_080 Hb_001160_110--Hb_003687_080 Hb_003160_070 Hb_003160_070 Hb_001160_110--Hb_003160_070 Hb_002026_090 Hb_002026_090 Hb_001160_110--Hb_002026_090 Hb_000032_410 Hb_000032_410 Hb_001160_110--Hb_000032_410 Hb_004158_050 Hb_004158_050 Hb_001160_110--Hb_004158_050 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_000453_230 Hb_000453_230 Hb_002447_050--Hb_000453_230 Hb_029552_020 Hb_029552_020 Hb_002447_050--Hb_029552_020 Hb_002447_050--Hb_000529_130 Hb_000331_340 Hb_000331_340 Hb_002447_050--Hb_000331_340 Hb_002447_050--Hb_000300_560 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_011188_010--Hb_004577_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1215 23.4706 59.7016 28.9293 9.66915 9.57097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82404 4.84589 4.55973 16.5647 36.6273

CAGE analysis