Hb_001279_020

Information

Type -
Description -
Location Contig1279: 22483-30868
Sequence    

Annotation

kegg
ID rcu:RCOM_0530650
description hypothetical protein
nr
ID XP_012071208.1
description PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10183 PE=4 SV=1
Gene Ontology
ID GO:0005819
description haus augmin-like complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08571: 22853-31023
cDNA
(Sanger)
(ID:Location)		 026_O23.ab1: 22855-25963

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_020 0.0 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
2 Hb_001396_020 0.0614650117 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
3 Hb_000562_070 0.0712797211 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
4 Hb_029552_020 0.0716385917 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001053_080 0.0726236937 - - OsCesA3 protein [Morus notabilis]
6 Hb_001279_090 0.0750119638 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
7 Hb_000529_130 0.0775599422 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
8 Hb_000300_560 0.080521137 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
9 Hb_001140_180 0.0807433794 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
10 Hb_005305_130 0.0828726512 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
11 Hb_000317_110 0.0855096225 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_001411_130 0.0867424857 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
13 Hb_007594_080 0.0873725912 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
14 Hb_006588_160 0.0900328613 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000453_030 0.0910735067 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
16 Hb_000862_100 0.0940502495 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
17 Hb_000001_090 0.0952046391 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
18 Hb_002849_050 0.0964973005 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
19 Hb_002828_060 0.0994610533 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
20 Hb_000878_160 0.1002967806 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001279_020 Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_000529_130 Hb_000529_130 Hb_001279_020--Hb_000529_130 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_002600_070 Hb_002600_070 Hb_001396_020--Hb_002600_070 Hb_001396_020--Hb_000529_130 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_000562_070--Hb_000529_130 Hb_001277_340 Hb_001277_340 Hb_000562_070--Hb_001277_340 Hb_000562_070--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_029552_020--Hb_005305_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_001053_080--Hb_001279_090 Hb_006588_160 Hb_006588_160 Hb_001053_080--Hb_006588_160 Hb_001053_080--Hb_001140_180 Hb_000001_090 Hb_000001_090 Hb_001053_080--Hb_000001_090 Hb_000358_210 Hb_000358_210 Hb_001053_080--Hb_000358_210 Hb_000808_210 Hb_000808_210 Hb_001279_090--Hb_000808_210 Hb_000302_190 Hb_000302_190 Hb_001279_090--Hb_000302_190 Hb_001279_090--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001279_090--Hb_070624_010 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73887 4.49451 9.35665 6.58204 3.02611 2.93962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0888 1.01591 1.94115 3.81244 7.90302

CAGE analysis