Hb_000808_210

Information

Type -
Description -
Location Contig808: 221360-224928
Sequence    

Annotation

kegg
ID eus:EUTSA_v10023481mg
description hypothetical protein
nr
ID XP_006392436.1
description hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
swissprot
ID P93508
description Calreticulin OS=Ricinus communis PE=2 SV=1
trembl
ID V4KII7
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10023481mg PE=3 SV=1
Gene Ontology
ID GO:0005788
description calreticulin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59098: 221340-224838
cDNA
(Sanger)
(ID:Location)		 053_D13.ab1: 223029-224838

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_210 0.0 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
2 Hb_001279_090 0.0860589567 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
3 Hb_000302_190 0.0941420152 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
4 Hb_030131_020 0.1100887186 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
5 Hb_001450_020 0.1119760921 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
6 Hb_070624_010 0.1144273506 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
7 Hb_000224_220 0.1224195999 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
8 Hb_000358_210 0.1271593172 - - oligosaccharyl transferase, putative [Ricinus communis]
9 Hb_001053_080 0.1273489284 - - OsCesA3 protein [Morus notabilis]
10 Hb_005701_090 0.1274266435 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_006816_190 0.1284459143 - - calreticulin family protein [Populus trichocarpa]
12 Hb_000265_070 0.1313950313 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
13 Hb_000009_020 0.1326082088 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
14 Hb_001789_160 0.1333698772 - - PREDICTED: putative transporter arsB [Jatropha curcas]
15 Hb_007594_080 0.133594224 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
16 Hb_000086_180 0.1366098927 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
17 Hb_002044_020 0.1375548992 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
18 Hb_029695_070 0.1384608785 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
19 Hb_004013_030 0.1389609165 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
20 Hb_004052_070 0.1399231659 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_210 Hb_000808_210 Hb_001279_090 Hb_001279_090 Hb_000808_210--Hb_001279_090 Hb_000302_190 Hb_000302_190 Hb_000808_210--Hb_000302_190 Hb_030131_020 Hb_030131_020 Hb_000808_210--Hb_030131_020 Hb_001450_020 Hb_001450_020 Hb_000808_210--Hb_001450_020 Hb_070624_010 Hb_070624_010 Hb_000808_210--Hb_070624_010 Hb_000224_220 Hb_000224_220 Hb_000808_210--Hb_000224_220 Hb_001053_080 Hb_001053_080 Hb_001279_090--Hb_001053_080 Hb_001279_020 Hb_001279_020 Hb_001279_090--Hb_001279_020 Hb_001279_090--Hb_000302_190 Hb_000358_210 Hb_000358_210 Hb_001279_090--Hb_000358_210 Hb_001279_090--Hb_070624_010 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_004052_070 Hb_004052_070 Hb_030131_020--Hb_004052_070 Hb_000009_020 Hb_000009_020 Hb_030131_020--Hb_000009_020 Hb_001624_040 Hb_001624_040 Hb_030131_020--Hb_001624_040 Hb_029695_070 Hb_029695_070 Hb_030131_020--Hb_029695_070 Hb_030131_020--Hb_001450_020 Hb_004013_030 Hb_004013_030 Hb_001450_020--Hb_004013_030 Hb_006588_160 Hb_006588_160 Hb_001450_020--Hb_006588_160 Hb_000154_050 Hb_000154_050 Hb_001450_020--Hb_000154_050 Hb_000497_190 Hb_000497_190 Hb_001450_020--Hb_000497_190 Hb_004032_370 Hb_004032_370 Hb_001450_020--Hb_004032_370 Hb_001450_020--Hb_001279_090 Hb_000926_060 Hb_000926_060 Hb_070624_010--Hb_000926_060 Hb_070624_010--Hb_000358_210 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_000645_180 Hb_000645_180 Hb_070624_010--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_070624_010--Hb_000265_070 Hb_070624_010--Hb_029695_070 Hb_004225_040 Hb_004225_040 Hb_000224_220--Hb_004225_040 Hb_005701_090 Hb_005701_090 Hb_000224_220--Hb_005701_090 Hb_001140_180 Hb_001140_180 Hb_000224_220--Hb_001140_180 Hb_000771_170 Hb_000771_170 Hb_000224_220--Hb_000771_170 Hb_000224_220--Hb_001279_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.2242 62.6512 380.812 163.221 144.372 62.3629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8225 27.1574 36.8142 140.494 218.921

CAGE analysis