Hb_005701_090

Information

Type -
Description -
Location Contig5701: 68587-72641
Sequence    

Annotation

kegg
ID pop:POPTR_0005s25630g
description POPTRDRAFT_1079544; hypothetical protein
nr
ID XP_012071975.1
description PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9FIG9
description Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1
trembl
ID A0A067KQU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04516 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protein accumulation and replication of chloroplasts chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49334: 68598-72465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_090 0.0 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001140_180 0.0938824954 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
3 Hb_000224_220 0.0990198759 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
4 Hb_000302_190 0.1021746307 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
5 Hb_000300_560 0.1022941634 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
6 Hb_000878_160 0.1024785976 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
7 Hb_001789_020 0.1048861142 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
8 Hb_000358_210 0.10508623 - - oligosaccharyl transferase, putative [Ricinus communis]
9 Hb_032823_020 0.106984523 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029552_020 0.1076296417 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001040_070 0.1090205688 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
12 Hb_001279_020 0.1104737549 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
13 Hb_001411_030 0.1111671999 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
14 Hb_004837_020 0.112094652 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
15 Hb_005323_010 0.1153606167 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
16 Hb_004225_040 0.1158139624 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
17 Hb_000771_170 0.1170532704 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_001053_080 0.1174131684 - - OsCesA3 protein [Morus notabilis]
19 Hb_001279_090 0.1176520892 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
20 Hb_002447_050 0.1184680426 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005701_090 Hb_005701_090 Hb_001140_180 Hb_001140_180 Hb_005701_090--Hb_001140_180 Hb_000224_220 Hb_000224_220 Hb_005701_090--Hb_000224_220 Hb_000302_190 Hb_000302_190 Hb_005701_090--Hb_000302_190 Hb_000300_560 Hb_000300_560 Hb_005701_090--Hb_000300_560 Hb_000878_160 Hb_000878_160 Hb_005701_090--Hb_000878_160 Hb_001789_020 Hb_001789_020 Hb_005701_090--Hb_001789_020 Hb_029552_020 Hb_029552_020 Hb_001140_180--Hb_029552_020 Hb_002828_060 Hb_002828_060 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_000224_220--Hb_000302_190 Hb_004225_040 Hb_004225_040 Hb_000224_220--Hb_004225_040 Hb_000224_220--Hb_001140_180 Hb_000771_170 Hb_000771_170 Hb_000224_220--Hb_000771_170 Hb_001279_090 Hb_001279_090 Hb_000224_220--Hb_001279_090 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_000302_190--Hb_001279_090 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_001396_020 Hb_001396_020 Hb_000300_560--Hb_001396_020 Hb_011188_010 Hb_011188_010 Hb_000300_560--Hb_011188_010 Hb_000482_050 Hb_000482_050 Hb_000300_560--Hb_000482_050 Hb_004577_010 Hb_004577_010 Hb_000300_560--Hb_004577_010 Hb_021596_020 Hb_021596_020 Hb_000300_560--Hb_021596_020 Hb_000300_560--Hb_001279_020 Hb_002461_020 Hb_002461_020 Hb_000878_160--Hb_002461_020 Hb_002600_070 Hb_002600_070 Hb_000878_160--Hb_002600_070 Hb_009178_010 Hb_009178_010 Hb_000878_160--Hb_009178_010 Hb_007283_010 Hb_007283_010 Hb_000878_160--Hb_007283_010 Hb_004324_330 Hb_004324_330 Hb_000878_160--Hb_004324_330 Hb_005333_140 Hb_005333_140 Hb_000878_160--Hb_005333_140 Hb_000562_050 Hb_000562_050 Hb_001789_020--Hb_000562_050 Hb_158092_080 Hb_158092_080 Hb_001789_020--Hb_158092_080 Hb_003398_100 Hb_003398_100 Hb_001789_020--Hb_003398_100 Hb_007035_040 Hb_007035_040 Hb_001789_020--Hb_007035_040 Hb_000011_270 Hb_000011_270 Hb_001789_020--Hb_000011_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.96059 8.29018 18.9864 9.73864 9.01143 7.08611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85391 2.67877 1.89751 12.0481 18.268

CAGE analysis