Hb_000562_050

Information

Type -
Description -
Location Contig562: 80558-81820
Sequence    

Annotation

kegg
ID rcu:RCOM_1597110
description ATRAD3, putative
nr
ID XP_012073835.1
description PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08239 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 022_C23.ab1: 81329-81882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000562_050 0.0 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
2 Hb_156850_090 0.0939027027 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_022250_010 0.0944645911 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
4 Hb_001789_020 0.0955800214 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
5 Hb_001059_130 0.0974352563 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
6 Hb_033642_060 0.097955242 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
7 Hb_006355_020 0.0987345335 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
8 Hb_000320_470 0.0989489571 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_183086_030 0.09998633 - - GTPase-activating protein GYP7 [Gossypium arboreum]
10 Hb_022250_100 0.1010395205 - - calnexin, putative [Ricinus communis]
11 Hb_000172_350 0.1044270421 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
12 Hb_001008_050 0.1049611922 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
13 Hb_000284_230 0.1057975805 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
14 Hb_158092_080 0.1066051363 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
15 Hb_001246_130 0.1069329214 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
16 Hb_001541_150 0.1073866152 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002784_030 0.1079712813 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
18 Hb_000579_240 0.1092863492 - - phosphatidylinositol transporter, putative [Ricinus communis]
19 Hb_073973_150 0.1096314296 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
20 Hb_001801_020 0.1098709728 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000562_050 Hb_000562_050 Hb_156850_090 Hb_156850_090 Hb_000562_050--Hb_156850_090 Hb_022250_010 Hb_022250_010 Hb_000562_050--Hb_022250_010 Hb_001789_020 Hb_001789_020 Hb_000562_050--Hb_001789_020 Hb_001059_130 Hb_001059_130 Hb_000562_050--Hb_001059_130 Hb_033642_060 Hb_033642_060 Hb_000562_050--Hb_033642_060 Hb_006355_020 Hb_006355_020 Hb_000562_050--Hb_006355_020 Hb_002475_040 Hb_002475_040 Hb_156850_090--Hb_002475_040 Hb_001935_160 Hb_001935_160 Hb_156850_090--Hb_001935_160 Hb_001008_050 Hb_001008_050 Hb_156850_090--Hb_001008_050 Hb_000181_100 Hb_000181_100 Hb_156850_090--Hb_000181_100 Hb_158092_080 Hb_158092_080 Hb_156850_090--Hb_158092_080 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_001789_020--Hb_158092_080 Hb_003398_100 Hb_003398_100 Hb_001789_020--Hb_003398_100 Hb_007035_040 Hb_007035_040 Hb_001789_020--Hb_007035_040 Hb_000011_270 Hb_000011_270 Hb_001789_020--Hb_000011_270 Hb_005701_090 Hb_005701_090 Hb_001789_020--Hb_005701_090 Hb_000284_230 Hb_000284_230 Hb_001059_130--Hb_000284_230 Hb_000588_080 Hb_000588_080 Hb_001059_130--Hb_000588_080 Hb_001194_020 Hb_001194_020 Hb_001059_130--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_001059_130--Hb_000358_100 Hb_000020_160 Hb_000020_160 Hb_001059_130--Hb_000020_160 Hb_001059_130--Hb_006355_020 Hb_033642_060--Hb_183086_030 Hb_001801_020 Hb_001801_020 Hb_033642_060--Hb_001801_020 Hb_033642_060--Hb_022250_010 Hb_000359_190 Hb_000359_190 Hb_033642_060--Hb_000359_190 Hb_002400_060 Hb_002400_060 Hb_033642_060--Hb_002400_060 Hb_001246_130 Hb_001246_130 Hb_033642_060--Hb_001246_130 Hb_006355_020--Hb_000284_230 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_006355_020--Hb_001194_020 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.02398 6.10911 8.28683 11.8954 6.86843 6.17066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63391 2.10198 3.19214 9.2418 15.2677

CAGE analysis