Hb_156850_090

Information

Type -
Description -
Location Contig156850: 60607-69209
Sequence    

Annotation

kegg
ID rcu:RCOM_1600730
description hypothetical protein
nr
ID XP_012073671.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KYA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08115 PE=4 SV=1
Gene Ontology
ID GO:0005768
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13655: 60616-68990 , PASA_asmbl_13656: 68994-69100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156850_090 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_002475_040 0.0815066068 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_001935_160 0.0830236354 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
4 Hb_001008_050 0.0875012657 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
5 Hb_000181_100 0.0884075327 - - PREDICTED: protein starmaker [Jatropha curcas]
6 Hb_158092_080 0.0885849316 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
7 Hb_000562_050 0.0939027027 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
8 Hb_005701_050 0.0940945057 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
9 Hb_012055_110 0.0951209523 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
10 Hb_000059_230 0.095892183 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
11 Hb_001210_050 0.095942847 - - hypothetical protein JCGZ_06216 [Jatropha curcas]
12 Hb_000196_060 0.0963054375 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
13 Hb_002391_050 0.0976770092 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
14 Hb_000270_190 0.0992661184 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
15 Hb_015978_100 0.1029639408 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
16 Hb_001085_290 0.103197677 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
17 Hb_000347_300 0.1046861827 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
18 Hb_000320_470 0.1049335458 - - calcium-dependent protein kinase [Hevea brasiliensis]
19 Hb_022425_030 0.1054819624 - - PREDICTED: casein kinase I [Jatropha curcas]
20 Hb_000284_230 0.1057226473 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]

Gene co-expression network

sample Hb_156850_090 Hb_156850_090 Hb_002475_040 Hb_002475_040 Hb_156850_090--Hb_002475_040 Hb_001935_160 Hb_001935_160 Hb_156850_090--Hb_001935_160 Hb_001008_050 Hb_001008_050 Hb_156850_090--Hb_001008_050 Hb_000181_100 Hb_000181_100 Hb_156850_090--Hb_000181_100 Hb_158092_080 Hb_158092_080 Hb_156850_090--Hb_158092_080 Hb_000562_050 Hb_000562_050 Hb_156850_090--Hb_000562_050 Hb_000284_230 Hb_000284_230 Hb_002475_040--Hb_000284_230 Hb_004064_050 Hb_004064_050 Hb_002475_040--Hb_004064_050 Hb_002475_040--Hb_158092_080 Hb_003124_160 Hb_003124_160 Hb_002475_040--Hb_003124_160 Hb_012055_110 Hb_012055_110 Hb_002475_040--Hb_012055_110 Hb_002475_040--Hb_001935_160 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_001935_160--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_001935_160--Hb_000879_040 Hb_000320_470 Hb_000320_470 Hb_001008_050--Hb_000320_470 Hb_001008_050--Hb_000181_100 Hb_002391_050 Hb_002391_050 Hb_001008_050--Hb_002391_050 Hb_001008_050--Hb_001935_160 Hb_001008_070 Hb_001008_070 Hb_001008_050--Hb_001008_070 Hb_089246_010 Hb_089246_010 Hb_001008_050--Hb_089246_010 Hb_000181_100--Hb_000320_470 Hb_004800_180 Hb_004800_180 Hb_000181_100--Hb_004800_180 Hb_000181_100--Hb_001008_070 Hb_005601_020 Hb_005601_020 Hb_000181_100--Hb_005601_020 Hb_026053_040 Hb_026053_040 Hb_000181_100--Hb_026053_040 Hb_031091_020 Hb_031091_020 Hb_000181_100--Hb_031091_020 Hb_007123_050 Hb_007123_050 Hb_158092_080--Hb_007123_050 Hb_158092_080--Hb_004064_050 Hb_158092_080--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_158092_080--Hb_007894_160 Hb_000608_300 Hb_000608_300 Hb_158092_080--Hb_000608_300 Hb_022250_010 Hb_022250_010 Hb_000562_050--Hb_022250_010 Hb_001789_020 Hb_001789_020 Hb_000562_050--Hb_001789_020 Hb_001059_130 Hb_001059_130 Hb_000562_050--Hb_001059_130 Hb_033642_060 Hb_033642_060 Hb_000562_050--Hb_033642_060 Hb_006355_020 Hb_006355_020 Hb_000562_050--Hb_006355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7264 11.7389 9.8274 12.1257 9.16323 6.74102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58028 3.49105 6.67663 12.1039 16.3143

CAGE analysis