Hb_001935_160

Information

Type -
Description -
Location Contig1935: 133358-136100
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14420g
description POPTRDRAFT_798966; hypothetical protein
nr
ID XP_012083634.1
description PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
swissprot
ID Q8VYT5
description F-box protein At5g07670 OS=Arabidopsis thaliana GN=At5g07670 PE=2 SV=1
trembl
ID A0A067JXX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14577 PE=4 SV=1
Gene Ontology
ID GO:0005784
description f-box protein at5g51370-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_160 0.0 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
2 Hb_000941_030 0.0643922007 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
3 Hb_012055_110 0.0681093356 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
4 Hb_002475_040 0.0706273807 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
5 Hb_000027_050 0.0727902397 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
6 Hb_000066_150 0.0747784261 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
7 Hb_000879_040 0.0749660957 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
8 Hb_002007_110 0.0766989242 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
9 Hb_092000_010 0.0767396639 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
10 Hb_003124_160 0.0767809424 - - dynamin, putative [Ricinus communis]
11 Hb_005563_060 0.0769626791 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
12 Hb_015978_100 0.0784613476 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
13 Hb_001723_140 0.078783956 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
14 Hb_133702_020 0.0795297124 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_004429_010 0.0798338091 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_002391_050 0.0813179595 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
17 Hb_001008_050 0.0817835348 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
18 Hb_000003_100 0.0821102057 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
19 Hb_002045_250 0.0827115234 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
20 Hb_156850_090 0.0830236354 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_001935_160 Hb_001935_160 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_012055_110 Hb_012055_110 Hb_001935_160--Hb_012055_110 Hb_002475_040 Hb_002475_040 Hb_001935_160--Hb_002475_040 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_001935_160--Hb_000879_040 Hb_004429_010 Hb_004429_010 Hb_000941_030--Hb_004429_010 Hb_001171_030 Hb_001171_030 Hb_000941_030--Hb_001171_030 Hb_000008_240 Hb_000008_240 Hb_000941_030--Hb_000008_240 Hb_000977_300 Hb_000977_300 Hb_000941_030--Hb_000977_300 Hb_004659_090 Hb_004659_090 Hb_000941_030--Hb_004659_090 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_012055_110--Hb_000066_150 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_000284_230 Hb_000284_230 Hb_002475_040--Hb_000284_230 Hb_004064_050 Hb_004064_050 Hb_002475_040--Hb_004064_050 Hb_158092_080 Hb_158092_080 Hb_002475_040--Hb_158092_080 Hb_003124_160 Hb_003124_160 Hb_002475_040--Hb_003124_160 Hb_002475_040--Hb_012055_110 Hb_000027_050--Hb_000879_040 Hb_001723_140 Hb_001723_140 Hb_000027_050--Hb_001723_140 Hb_003943_010 Hb_003943_010 Hb_000027_050--Hb_003943_010 Hb_000252_050 Hb_000252_050 Hb_000027_050--Hb_000252_050 Hb_001268_280 Hb_001268_280 Hb_000027_050--Hb_001268_280 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_000099_040 Hb_000099_040 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.42321 8.36531 5.63647 6.45996 4.52804 5.87293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52274 1.83791 3.16888 6.90461 7.91634

CAGE analysis