Hb_000008_240

Information

Type -
Description -
Location Contig8: 329455-339849
Sequence    

Annotation

kegg
ID rcu:RCOM_0034730
description hypothetical protein
nr
ID XP_002529943.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5F471
description Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1
trembl
ID B9SVC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0034730 PE=4 SV=1
Gene Ontology
ID GO:0005488
description serine threonine-protein phosphatase 6 regulatory subunit 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58677: 329454-339770 , PASA_asmbl_58678: 330352-331089 , PASA_asmbl_58679: 336857-337225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000331_580 0.0434560932 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
3 Hb_004517_020 0.0489669573 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
4 Hb_002768_050 0.0519075428 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
5 Hb_005568_040 0.0536660326 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
6 Hb_002007_110 0.0577756224 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
7 Hb_000479_240 0.0579031332 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
8 Hb_000003_100 0.0591953989 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
9 Hb_003929_210 0.0616250542 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_004429_010 0.0620852274 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_000120_910 0.0625929178 - - plant ubiquilin, putative [Ricinus communis]
12 Hb_022425_030 0.0630006337 - - PREDICTED: casein kinase I [Jatropha curcas]
13 Hb_000977_300 0.0659264948 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
14 Hb_000879_040 0.0660129307 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
15 Hb_000373_170 0.0662025153 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
16 Hb_003939_060 0.0663654522 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000110_350 0.0664799341 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
18 Hb_001545_150 0.0665408726 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
19 Hb_031527_030 0.067906565 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
20 Hb_001473_110 0.0681631529 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]

Gene co-expression network

sample Hb_000008_240 Hb_000008_240 Hb_000331_580 Hb_000331_580 Hb_000008_240--Hb_000331_580 Hb_004517_020 Hb_004517_020 Hb_000008_240--Hb_004517_020 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_005568_040 Hb_005568_040 Hb_000008_240--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000008_240--Hb_002007_110 Hb_000479_240 Hb_000479_240 Hb_000008_240--Hb_000479_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_000331_580--Hb_005568_040 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_000120_910 Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350 Hb_002768_050--Hb_000110_350 Hb_000445_060 Hb_000445_060 Hb_002768_050--Hb_000445_060 Hb_000676_330 Hb_000676_330 Hb_002768_050--Hb_000676_330 Hb_002768_050--Hb_004517_020 Hb_003929_210 Hb_003929_210 Hb_002768_050--Hb_003929_210 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7897 48.2712 28.5316 32.6052 22.7059 24.6899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8741 13.1784 18.8508 31.4587 31.4114

CAGE analysis