Hb_001723_010

Information

Type -
Description -
Location Contig1723: 10724-24991
Sequence    

Annotation

kegg
ID rcu:RCOM_1002390
description ubiquitin-protein ligase, putative
nr
ID XP_012084139.1
description PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
swissprot
ID Q8RWB8
description E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1
trembl
ID A0A067JVG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19051 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16255: 10974-14725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
2 Hb_000340_030 0.0373393691 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
3 Hb_004517_020 0.0413133806 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
4 Hb_003711_010 0.0553384938 - - isopropylmalate synthase, putative [Ricinus communis]
5 Hb_000139_320 0.0558712158 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
6 Hb_000373_170 0.0586323535 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
7 Hb_000120_910 0.0595670847 - - plant ubiquilin, putative [Ricinus communis]
8 Hb_001673_050 0.0607817281 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
9 Hb_031641_010 0.0608770288 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000684_510 0.0629498636 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
11 Hb_002849_170 0.0636773363 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
12 Hb_000189_630 0.0674435812 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_007426_060 0.0675782967 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
14 Hb_000977_300 0.0688621371 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
15 Hb_000363_120 0.0690611214 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
16 Hb_000661_120 0.0693155058 - - cap binding protein, putative [Ricinus communis]
17 Hb_000949_020 0.0694801394 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
18 Hb_000529_060 0.0709264383 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
19 Hb_000996_020 0.071587434 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
20 Hb_000862_040 0.0720704668 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001723_010 Hb_001723_010 Hb_000340_030 Hb_000340_030 Hb_001723_010--Hb_000340_030 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_003711_010 Hb_003711_010 Hb_001723_010--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_001723_010--Hb_000139_320 Hb_000373_170 Hb_000373_170 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_000340_030--Hb_000139_320 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_000340_030--Hb_003711_010 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_004517_020--Hb_000120_910 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_003711_010--Hb_000373_170 Hb_003711_010--Hb_000139_320 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_000996_020 Hb_000996_020 Hb_000373_170--Hb_000996_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.34282 17.4493 13.1079 10.1664 9.69637 8.57791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88874 6.23488 6.60583 13.2034 8.50851

CAGE analysis